ClusteredMutations: Location and Visualization of Clustered Somatic Mutations

Identification and visualization of groups of closely spaced mutations in the DNA sequence of cancer genome. The extremely mutated zones are searched in the symmetric dissimilarity matrix using the anti-Robinson matrix properties. Different data sets are obtained to describe and plot the clustered mutations information.

Author
David Lora [aut, cre]
Date of publication
2016-04-29 07:44:36
Maintainer
David Lora <david@h12o.es>
License
GPL-3
Version
1.0.1

View on CRAN

Man pages

dissmutmatrix
Symmetric dissimilarity mutation matrix.
features
Describe the features of mutation in the hyper-mutated zones.
imd
Calculate of the inter-mutational distance (IMD).
PD4107a
Somatic mutations data set from a primary breast cancer...
showers
Location of clustered mutations in the cancer genome.

Files in this package

ClusteredMutations
ClusteredMutations/inst
ClusteredMutations/inst/doc
ClusteredMutations/inst/doc/vignetteClustered.R
ClusteredMutations/inst/doc/vignetteClustered.Rnw
ClusteredMutations/inst/doc/vignetteClustered.pdf
ClusteredMutations/NAMESPACE
ClusteredMutations/data
ClusteredMutations/data/PD4107a.rda
ClusteredMutations/R
ClusteredMutations/R/showers.R
ClusteredMutations/R/dissmutmatrix.R
ClusteredMutations/R/imd.R
ClusteredMutations/R/features.R
ClusteredMutations/vignettes
ClusteredMutations/vignettes/ClusteredMutationsVignettes.bib
ClusteredMutations/vignettes/figura1.pdf
ClusteredMutations/vignettes/vignetteClustered.Rnw
ClusteredMutations/vignettes/figura3.pdf
ClusteredMutations/MD5
ClusteredMutations/build
ClusteredMutations/build/vignette.rds
ClusteredMutations/DESCRIPTION
ClusteredMutations/man
ClusteredMutations/man/imd.Rd
ClusteredMutations/man/features.Rd
ClusteredMutations/man/showers.Rd
ClusteredMutations/man/PD4107a.Rd
ClusteredMutations/man/dissmutmatrix.Rd