tableLargeScaleCharacteristics: Explore and compare the large scale characteristics of...

In CohortCharacteristics: Summarise and Visualise Characteristics of Patients in the OMOP CDM

Explore and compare the large scale characteristics of cohorts

Description

Explore and compare the large scale characteristics of cohorts

Usage

tableLargeScaleCharacteristics(
  result,
  compareBy = NULL,
  hide = c("type"),
  smdReference = NULL,
  type = "reactable"
)

Arguments

result	A summarised_result object.
compareBy	A column to compare by it can be a choice between "cdm_name", "cohort_name", strata columns, "variable_level" (window) and "type". It can be left NULL for no comparison.
hide	Columns to hide.
smdReference	Level of reference for the Standardised Mean Differences (SMD), it has to be one of the values of compareBy column. If NULL no SMDs are displayed.
type	Type of table to generate, it can be either DT or reactable.

Value

A visual table.

Examples

## Not run: 
library(CohortCharacteristics)
library(omock)
library(CDMConnector)
library(dplyr, warn.conflicts = FALSE)

cdm <- mockCdmFromDataset(datasetName = "GiBleed", source = "duckdb")

cdm <- generateConceptCohortSet(
  cdm = cdm,
  conceptSet = list(viral_pharyngitis = 4112343),
  name = "my_cohort"
)

result <- summariseLargeScaleCharacteristics(
  cohort = cdm$my_cohort,
  window = list(c(-Inf, -1), c(0, 0), c(1, Inf)),
  episodeInWindow = "drug_exposure"
)

tableLargeScaleCharacteristics(result)

tableLargeScaleCharacteristics(result,
                               compareBy = "variable_level")

tableLargeScaleCharacteristics(result,
                               compareBy = "variable_level",
                               smdReference = "-inf to -1")

cdmDisconnect(cdm)

## End(Not run)

CohortCharacteristics documentation built on Nov. 5, 2025, 5:07 p.m.