mockCohortConstructor: Function to create a mock cdm reference for CohortConstructor

In CohortConstructor: Build and Manipulate Study Cohorts Using a Common Data Model

Function to create a mock cdm reference for CohortConstructor

Description

mockCohortConstructor() creates an example dataset that can be used for demonstrating and testing the package

Usage

mockCohortConstructor(
  nPerson = 10,
  conceptTable = NULL,
  tables = NULL,
  conceptId = NULL,
  conceptIdClass = NULL,
  drugExposure = FALSE,
  conditionOccurrence = FALSE,
  measurement = FALSE,
  death = FALSE,
  otherTables = NULL,
  con = DBI::dbConnect(duckdb::duckdb()),
  writeSchema = "main",
  seed = 123
)

Arguments

nPerson	number of person in the cdm
conceptTable	user defined concept table
tables	list of tables to include in the cdm
conceptId	list of concept id
conceptIdClass	the domain class of the conceptId
drugExposure	T/F include drug exposure table in the cdm
conditionOccurrence	T/F include condition occurrence in the cdm
measurement	T/F include measurement in the cdm
death	T/F include death table in the cdm
otherTables	it takes a list of single tibble with names to include other tables in the cdm
con	A DBI connection to create the cdm mock object.
writeSchema	Name of an schema on the same connection with writing permissions.
seed	Seed passed to omock::mockCdmFromTable

Value

cdm object

Examples

library(CohortConstructor)

cdm <- mockCohortConstructor()

cdm

CohortConstructor documentation built on June 8, 2025, 12:49 p.m.