| CaseControlRun | Fully runs a case-control regression model, returning the... |
| ColossusCoxSurv | Interprets basic cox survival formula RHS |
| ColossusLogitSurv | Interprets basic logistic survival formula RHS with no... |
| ColossusPoisSurv | Interprets basic poisson survival formula RHS |
| CoxRun | Fully runs a cox or fine-gray regression model, returning the... |
| CoxRunMulti | Fully runs a cox or fine-gray regression model with multiple... |
| Date_Shift | Automates creating a date difference column |
| EventAssignment | Generic background/excess event calculation function |
| EventAssignment.default | Predicts how many events are due to baseline vs excess |
| EventAssignment.poisres | Predicts how many events are due to baseline vs excess for a... |
| EventAssignment.poisresbound | Predicts how many events are due to baseline vs excess for a... |
| Event_Count_Gen | uses a table, list of categories, and list of event summaries... |
| Event_Time_Gen | uses a table, list of categories, list of summaries, list of... |
| factorize | Splits a parameter into factors |
| gen_time_dep | Applies time dependence to parameters |
| get_form | Interprets a Colossus formula and makes necessary changes to... |
| get_form_joint | Interprets a Poisson joint formula and makes necessary... |
| Joint_Multiple_Events | Automates creating data for a joint competing risks analysis |
| LikelihoodBound | Generic likelihood boundary calculation function |
| LikelihoodBound.coxres | Calculates the likelihood boundary for a completed cox model |
| LikelihoodBound.default | Generic likelihood boundary calculation function, default... |
| LikelihoodBound.poisres | Calculates the likelihood boundary for a completed Poisson... |
| Likelihood_Ratio_Test | Defines the likelihood ratio test |
| Linked_Dose_Formula | Calculates Full Parameter list for Special Dose Formula |
| Linked_Lin_Exp_Para | Calculates The Additional Parameter For a linear-exponential... |
| LogisticRun | Fully runs a logistic regression model, returning the model... |
| OMP_Check | Checks the OMP flag |
| plot.coxres | Performs Cox Proportional Hazard model plots |
| plotMartingale | Generic Martingale Residual Plotting function |
| plotMartingale.coxres | Performs Cox Proportional Hazard model martingale residual... |
| plotMartingale.default | Generic Martingale Residual Plotting function, default option |
| plotRisk | Generic Risk Plotting function |
| plotRisk.coxres | Performs Cox Proportional Hazard model hazard ratio plots |
| plotRisk.default | Generic Risk Plotting function, default option |
| plotSchoenfeld | Generic Schoenfeld Residual Plotting function |
| plotSchoenfeld.coxres | Performs Cox Proportional Hazard model schoenfeld residual... |
| plotSchoenfeld.default | Generic Schoenfeld Residual Plotting function, default option |
| plotSurvival | Generic Survival Plotting function |
| plotSurvival.coxres | Performs Cox Proportional Hazard model survival plots |
| plotSurvival.default | Generic Survival Plotting function, default option |
| PoisRun | Fully runs a poisson regression model, returning the model... |
| PoisRunJoint | Fully runs a joint poisson regression model, returning the... |
| PoisRunMulti | Fully runs a poisson regression model with multiple column... |
| print.caseconres | Prints a case-control regression output clearly |
| print.coxres | Prints a cox regression output clearly |
| print.coxresbound | Prints a cox likelihood boundary regression output clearly |
| print.logitres | Prints a logistic regression output clearly |
| print.poisres | Prints a poisson regression output clearly |
| print.poisresbound | Prints a poisson likelihood boundary regression output... |
| RelativeRisk | Generic relative risk calculation function |
| RelativeRisk.coxres | Calculates hazard ratios for a reference vector |
| RelativeRisk.default | Generic relative risk calculation function, default option |
| Replace_Missing | Automatically assigns missing values in listed columns |
| Residual | Generic Residual calculation function |
| Residual.default | Generic Residual calculation function, default option |
| Residual.poisres | Calculates the Residuals for a completed poisson model |
| System_Version | Checks OS, compilers, and OMP |
| Time_Since | Automates creating a date since a reference column |
