comfam_shiny: Batch Effect Interactive Visualization
In ComBatFamQC: Comprehensive Batch Effect Diagnostics and Harmonization

comfam_shiny

R Documentation

Batch Effect Interactive Visualization

Description

Provides an interactive visualization of batch or site effects using a Shiny application.

Usage

comfam_shiny(result, after = FALSE)

Arguments

`result`	A list derived from `visual_prep()` that contains datasets and statistical test results for Shiny visualization.
`after`	A boolean variable indicating whether the batch effect diagnostic occurs before or after harmonization (default: `FALSE`).

Details

When this function is called, it starts a Shiny application in the user's default web browser. Execution is blocked until the app is closed.

Value

This function does not return a value. It launches a Shiny app.

Examples

result_lm <- visual_prep(type = "lm", features = colnames(adni)[43:53],
batch = "manufac", covariates = c("AGE", "SEX", "DIAGNOSIS"),
df = head(adni, 500), cores = 1)
if (interactive()) {
  comfam_shiny(result = result_lm)
}

ComBatFamQC documentation built on April 4, 2025, 12:24 a.m.