ComICS: Computational Methods for Immune Cell-Type Subsets

Provided are Computational methods for Immune Cell-type Subsets, including:(1) DCQ (Digital Cell Quantifier) to infer global dynamic changes in immune cell quantities within a complex tissue; and (2) VoCAL (Variation of Cell-type Abundance Loci) a deconvolution-based method that utilizes transcriptome data to infer the quantities of immune-cell types, and then uses these quantitative traits to uncover the underlying DNA loci.

Author
Yael Steuerman [aut, cre], Irit Gat-Viks [aut]
Date of publication
2016-03-07 22:38:53
Maintainer
Yael Steuerman <yaelsteu@mail.tau.ac.il>
License
GPL-2
Version
1.0.3
URLs

View on CRAN

Man pages

ComICS
Computational methods for Immune Cell-type Subsets
ComICS-internal
ComICS-internal
commons
Shared Immunological datasets
dcq
DCQ - Digital Cell Quantifier
dcqEx
Example datasets for runnning dcq
vocal
Variation in Cell Abundance Loci
vocalEx
Example datasets for runnning vocal

Files in this package

ComICS
ComICS/NAMESPACE
ComICS/data
ComICS/data/dcqEx.RData
ComICS/data/commons.RData
ComICS/data/vocalEx.RData
ComICS/R
ComICS/R/IterativeFilteration.R
ComICS/R/helperFunc.R
ComICS/R/deconvolution.R
ComICS/R/vocal.R
ComICS/R/zzz.R
ComICS/MD5
ComICS/DESCRIPTION
ComICS/man
ComICS/man/commons.Rd
ComICS/man/ComICS-internal.Rd
ComICS/man/vocalEx.Rd
ComICS/man/vocal.Rd
ComICS/man/dcq.Rd
ComICS/man/dcqEx.Rd
ComICS/man/ComICS.Rd