CommT: Comparative Phylogeographic Analysis using the Community Tree Framework
Version 0.1.1

Provides functions to measure the difference between constrained and unconstrained gene tree distributions using various tree distance metrics. Constraints are enforced prior to this analysis via the estimation of a tree under the community tree model.

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AuthorMichael Gruenstaeudl, PhD
Date of publication2015-06-16 19:51:19
MaintainerMichael Gruenstaeudl <mi.gruenstaeudl@gmail.com>
LicenseGPL (>= 2)
Version0.1.1
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("CommT")

Man pages

CommT.anova: Conduct ANOVA analysis on tree distance matrix
CommT.kfdist: Calculate the tree distance metric
CommT.legendpos: Infer coordinates for plot legend
CommT-package: Comparative phylogeographic analysis using the community tree...
CommT.viz: Visualize tree distances and ANOVA results
post_gt_distrs_BEAST: Data set post_gt_distrs_BEAST
post_gt_distrs_starBEAST: Data set post_gt_distrs_starBEAST

Functions

CommT Man page
CommT-package Man page
CommT.anova Man page Source code
CommT.kfdist Man page Source code
CommT.legendpos Man page Source code
CommT.plotcolors Source code
CommT.viz Man page Source code
post_gt_distrs_BEAST Man page
post_gt_distrs_starBEAST Man page
sourceDir Source code

Files

NAMESPACE
data
data/post_gt_distrs_starBEAST.rda
data/post_gt_distrs_BEAST.rda
R
R/CommT.kfdist.R
R/sourceDir.R
R/CommT.viz.R
R/CommT.anova.R
R/CommT.plotcolors.R
R/CommT.legendpos.R
MD5
DESCRIPTION
man
man/CommT.viz.Rd
man/CommT.legendpos.Rd
man/post_gt_distrs_BEAST.Rd
man/CommT.anova.Rd
man/post_gt_distrs_starBEAST.Rd
man/CommT-package.Rd
man/CommT.kfdist.Rd
CommT documentation built on May 19, 2017, 2:23 p.m.