extractors: Extract elements from an object

In ConFluxPro: Soil Gas Analysis and Flux Modeling

Extract elements from an object

Description

These functions extract components from different objects that can be created in ConFluxPro.

Usage

cfp_og_model(x)

## S3 method for class 'cfp_altres'
cfp_og_model(x)

cfp_id_cols(x)

cfp_gases(x)

cfp_modes(x)

cfp_param(x)

cfp_funs(x)

cfp_zero_flux(x)

cfp_zero_limits(x)

cfp_DSD0_optim(x)

cfp_evenness_factor(x)

cfp_known_flux_factor(x)

cfp_runmap_type(x)

cfp_params_df(x)

cfp_n_runs(x)

cfp_layers_different(x)

cfp_layers_from(x)

cfp_layers_altmap(x)

Arguments

x	An object from which to extract the information.

Value

The extracted component, e.g. a data.frame() or character().

Examples

my_data <- ConFluxPro::base_dat |>
  filter(Date == "2021-01-01") # subset for example = faster runtime

### from cfp_dat objects (and derivatives)
cfp_id_cols(my_data)

cfp_gasdata(my_data) |> head()
cfp_soilphys(my_data) |> head()
cfp_layers_map(my_data) |> head()
my_data$profiles |> head()

### from cfp_pfmod or cfp_pfres objects
PROFLUX <- my_data |> pro_flux()
cfp_zero_flux(PROFLUX)
cfp_zero_limits(PROFLUX)
cfp_DSD0_optim(PROFLUX) #deprecated
cfp_evenness_factor(PROFLUX)
cfp_known_flux_factor(PROFLUX)
PROFLUX$PROFLUX |> head()

### from cfp_fgmod or cfp_fgres objects
FLUX <- my_data |> fg_flux()

cfp_gases(FLUX)
cfp_modes(FLUX)
cfp_param(FLUX)
cfp_funs(FLUX)
FLUX$FLUX |> head()

### from cfp_run_map
set.seed(42)
my_run_map <-
cfp_run_map(
  PROFLUX,
  list("TPS" = c(0.9, 1.1)),
  "factor",
  n_runs = 2)

cfp_params_df(my_run_map)
cfp_n_runs(my_run_map)
cfp_layers_from(my_run_map)
cfp_layers_different(my_run_map)
cfp_runmap_type(my_run_map)
cfp_layers_altmap(my_run_map)

### from cfp_altres
my_altres <-
alternate(
  x = PROFLUX,
  f = \(x) complete_soilphys(x, "a+AFPS^b", quiet = TRUE),
  run_map = my_run_map)

cfp_og_model(my_altres)
cfp_run_map(my_altres)

ConFluxPro documentation built on Aug. 8, 2025, 7:01 p.m.