ConsensusOPLS-class | R Documentation |
ConsensusOPLS
S4 classAn object returned by the ConsensusOPLS
function,
of class ConsensusOPLS
, and representing a fitted Consensus OPLS
model.
modelType
The type of requested OPLS regression model.
response
The provided response variable (Y).
nPcomp
Number of Y-predictive components (latent variables) of the optimal model.
nOcomp
Number of Y-orthogonal components (latent variables) of the optimal model.
blockContribution
Relative contribution of each block (normalized
lambda
values) to the latent variables.
scores
Representation of the samples in the latent variables of the optimal model.
loadings
Contribution of each block's variables to the latent variables of the optimal model.
VIP
Variable importance in projection (VIP) for each block of data, assessing the relevance of the variables in explaining the variation in the response.
R2X
Proportion of variation in data blocks explained by the optimal model.
R2Y
Proportion of variation in the response explained by the optimal model.
Q2
Predictive ability of the optimal model.
DQ2
Predictive ability of the optimal discriminant model.
permStats
Assessment of models with permuted response.
model
The optimal model.
cv
Cross-validation result towards the optimal model. Contains
AllYhat
(all predicted Y values as a concatenated matrix),
cvTestIndex
(indexes for the test set observations during the
cross-validation rounds), DQ2Yhat
(total discriminant Q-square result
for all Y-orthogonal components), nOcompOpt
(optimal number of
Y-orthogonal components (latent variables) for the optimal model), and
Q2Yhat
(total Q-square result for all Y-orthogonal components).
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