fit: A function to fit the model.

fitR Documentation

A function to fit the model.

Description

A function to fit the model.

Usage

fit(object, ...)

## S4 method for signature 'cdtamodel'
fit(
  object,
  data,
  SID,
  cores = 3,
  chains = 3,
  iter = 6000,
  warmup = 1000,
  thin = 10,
  ...
)

Arguments

object

A cdtamodel object created by cdtamodel function.

...

Other optional parameters as specified in stan.

data

A data-frame with no missing values containing TP, TN, FP, FN, 'SID' and co-variables(if necessary).

SID

A string indicating the name of the column with the study identifier.

cores

A positive numeric values specifying the number of cores to use to execute parallel sampling. When the hardware has more at least 4 cores, the default is 3 cores and otherwise 1 core.

chains

A positive numeric value specifying the number of chains, default is 3.

iter

A positive numeric value specifying the number of iterations per chain. The default is 6000.

warmup

A positive numeric value (<iter) specifying the number of iterations to be discarded(burn-in/warm-up). The default is 1000.

thin

A positive numeric value specifying the interval in which the samples are stored. The default is 10.


CopulaDTA documentation built on March 7, 2023, 5:25 p.m.