Description Usage Arguments Examples
optional function to make all the regions in 3 fixed log levels (deletion, normal, duplication) and then to plot the samples
1 | PlotMerged(object, cutoff = 0.1, markers = 20, ...)
|
object |
Data object, as returned by |
cutoff |
This cutt of will affect these plots, default is cutoff = 0.1 |
markers |
minimum number of marker required in the region, default is (markers = 20) |
... |
Sent to |
1 2 3 4 5 6 7 8 9 10 | # the package contains example files: regions.csv and sample_list.csv
#to load the example regions.csv and sample_list.csv files
regions <- system.file("extdata", "regions.csv", package="CopyNumber450kCancer")
sample_list <- system.file("extdata", "sample_list.csv", package="CopyNumber450kCancer")
# Creat the object for the package
object <- ReadData(regions,sample_list)
# Optional function to plot all the amplifications and delections in the same level
PlotMerged(object,comment = TRUE, cutoff = 0.2, markers = 5)
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