R/Taxonomy_dataset.R

In CoreMicrobiomeR: Identification of Core Microbiome

#' Arabidopsis thaliana - Taxonomy dataset
#'
#'
#' This dataset was given by Lundberg et al., (2012). The taxonomy table provides
#' information about the taxonomic identity of the OTUs listed in the OTU table.
#' Each row in the taxonomy table corresponds to an OTU from the OTU table, and
#' the columns provide details about the taxonomic classification of that OTU,
#' such as kingdom, phylum, class, order, family, genus, and species. This
#' information allows researchers to identify the microbial species or groups
#' that are present in the root samples.
#' The original dataset contains 777 rows of OTUs and Phylum, Class, Order,
#' Family in columns corresponding to particular OTU.
#'
#' Here only the portion of the dataset is taken for running the functions.
#' The dataset contains 188 rows and 5 columns.
#'
#'
#' @source \doi{10.1038/nature11237}
"demo_tax"