CpGFilter: CpG Filtering Method Based on Intra-Class Correlation Coefficients

Filter CpGs based on Intra-class Correlation Coefficients (ICCs) when replicates are available. ICCs are calculated by fitting linear mixed effects models to all samples including the un-replicated samples. Including the large number of un-replicated samples improves ICC estimates dramatically. The method accommodates any replicate design.

Getting started

Package details

AuthorJun Chen <[email protected]>
MaintainerJun Chen <[email protected]>
Package repositoryView on CRAN
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CpGFilter documentation built on Aug. 24, 2017, 1:06 a.m.