CpGFilter: CpG Filtering Method Based on Intra-class Correlation Coefficients
Filter CpGs based on Intra-class Correlation Coefficients (ICCs) when replicates are available. ICCs are calculated by fitting linear mixed effects models to all samples including the un-replicated samples. Including the large number of un-replicated samples improves ICC estimates dramatically. The method accommodates any replicate design.
- Jun Chen
- Date of publication
- 2014-11-06 01:21:42
- Jun Chen <email@example.com>
- Convert CpG Beta value to M value
- CpG filtering method based on intra-class correlation...
- CpG filtering method based on linear mixed effects model.
Files in this package