CpGFilter: CpG Filtering Method Based on Intra-Class Correlation Coefficients

Filter CpGs based on Intra-class Correlation Coefficients (ICCs) when replicates are available. ICCs are calculated by fitting linear mixed effects models to all samples including the un-replicated samples. Including the large number of un-replicated samples improves ICC estimates dramatically. The method accommodates any replicate design.

Getting started

Package details

AuthorJun Chen <Chen.Jun2@mayo.edu>
MaintainerJun Chen <chen.jun2@mayo.edu>
Package repositoryView on CRAN
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CpGFilter documentation built on May 2, 2019, 4:03 p.m.