CpGFilter: CpG Filtering Method Based on Intra-class Correlation Coefficients

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Filter CpGs based on Intra-class Correlation Coefficients (ICCs) when replicates are available. ICCs are calculated by fitting linear mixed effects models to all samples including the un-replicated samples. Including the large number of un-replicated samples improves ICC estimates dramatically. The method accommodates any replicate design.

Author
Jun Chen
Date of publication
2014-11-06 01:21:42
Maintainer
Jun Chen <chen.jun2@mayo.edu>
License
GPL-2
Version
1.0

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Man pages

B2M
Convert CpG Beta value to M value
CpGFilterICC
CpG filtering method based on intra-class correlation...
CpGFilter-package
CpG filtering method based on linear mixed effects model.

Files in this package

CpGFilter
CpGFilter/NAMESPACE
CpGFilter/R
CpGFilter/R/CpGFilterICC.R
CpGFilter/R/B2M.R
CpGFilter/MD5
CpGFilter/DESCRIPTION
CpGFilter/man
CpGFilter/man/CpGFilter-package.Rd
CpGFilter/man/B2M.Rd
CpGFilter/man/CpGFilterICC.Rd