Filter CpGs based on Intra-class Correlation Coefficients (ICCs) when replicates are available. ICCs are calculated by fitting linear mixed effects models to all samples including the un-replicated samples. Including the large number of un-replicated samples improves ICC estimates dramatically. The method accommodates any replicate design.
|Date of publication||2014-11-06 01:21:42|
|Maintainer||Jun Chen <email@example.com>|
|Package repository||View on CRAN|
|Installation||Install the latest version of this package by entering the following in R:
|B2M: Convert CpG Beta value to M value|
|CpGFilterICC: CpG filtering method based on intra-class correlation...|
|CpGFilter-package: CpG filtering method based on linear mixed effects model.|
|B2M||Man page Source code|
|CpGFilterICC||Man page Source code|
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