obs_input: A data frame of observed spike in ERCC normalized LCPM data

In CpmERCCutoff: Calculation of Log2 Counts per Million Cutoff from ERCC Controls

A data frame of observed spike in ERCC normalized LCPM data

Description

A data frame of observed gene expression results for ERCC RNA that was spiked into samples. Data are read coverage-normalized log2 counts per million (LCPM).

Usage

obs_input

Format

A data frame with 92 rows and 50 Columns: Each row is an ERCC transcript, and each column is a sample. Data are read coverage-normalized LCPM.

X

This first column is ERCC spike in mRNA Ids (ERCC-00002 – ERCC-00171)

SAM15

Sample 15 containing normalized log2 counts per million

SAM36

Sample 36 containing normalized log2 counts per million

SAM19

Sample 19 containing normalized log2 counts per million

SAM53

Sample 53 containing normalized log2 counts per million

SAM42

Sample 42 containing normalized log2 counts per million

SAM32

Sample 32 containing normalized log2 counts per million

SAM18

Sample 18 containing normalized log2 counts per million

SAM48

Sample 48 containing normalized log2 counts per million

SAM26

Sample 26 containing normalized log2 counts per million

SAM37

Sample 37 containing normalized log2 counts per million

SAM38

Sample 38 containing normalized log2 counts per million

SAM29

Sample 29 containing normalized log2 counts per million

SAM17

Sample 17 containing normalized log2 counts per million

SAM41

Sample 41 containing normalized log2 counts per million

SAM09

Sample 09 containing normalized log2 counts per million

SAM07

Sample 07 containing normalized log2 counts per million

SAM14

Sample 14 containing normalized log2 counts per million

SAM02

Sample 02 containing normalized log2 counts per million

SAM05

Sample 05 containing normalized log2 counts per million

SAM25

Sample 25 containing normalized log2 counts per million

SAM08

Sample 08 containing normalized log2 counts per million

SAM28

Sample 28 containing normalized log2 counts per million

SAM44

Sample 44 containing normalized log2 counts per million

SAM04

Sample 04 containing normalized log2 counts per million

SAM10

Sample 10 containing normalized log2 counts per million

SAM31

Sample 31 containing normalized log2 counts per million

SAM21

Sample 21 containing normalized log2 counts per million

SAM20

Sample 20 containing normalized log2 counts per million

SAM52

Sample 52 containing normalized log2 counts per million

SAM46

Sample 46 containing normalized log2 counts per million

SAM01

Sample 01 containing normalized log2 counts per million

SAM13

Sample 13 containing normalized log2 counts per million

SAM39

Sample 39 containing normalized log2 counts per million

SAM49

Sample 49 containing normalized log2 counts per million

SAM30

Sample 30 containing normalized log2 counts per million

SAM50

Sample 50 containing normalized log2 counts per million

SAM11

Sample 11 containing normalized log2 counts per million

SAM35

Sample 35 containing normalized log2 counts per million

SAM06

Sample 06 containing normalized log2 counts per million

SAM27

Sample 27 containing normalized log2 counts per million

SAM33

Sample 33 containing normalized log2 counts per million

SAM22

Sample 22 containing normalized log2 counts per million

SAM24

Sample 24 containing normalized log2 counts per million

SAM16

Sample 16 containing normalized log2 counts per million

SAM34

Sample 34 containing normalized log2 counts per million

SAM03

Sample 03 containing normalized log2 counts per million

SAM47

Sample 47 containing normalized log2 counts per million

SAM40

Sample 40 containing normalized log2 counts per million

SAM23

Sample 23 containing normalized log2 counts per million

CpmERCCutoff documentation built on Sept. 13, 2022, 5:06 p.m.