DBGSA: methods of distance-based gene set functional enrichment analysis.
Version 1.2

This package provides methods and examples to support a method of Gene Set Analysis (GSA). DBGSA is a novel distance-based gene set enrichment analysis method. We consider that, the distance between 2 groups with different phenotype by focusing on the gene expression should be larger, if a certain gene functional set was significantly associated with a particular phenotype.

AuthorLi Jin, Huang Meilin
Date of publication2012-01-16 07:32:40
MaintainerLi Jin <lijin@hrbmu.edu.cn>
LicenseGPL-3
Version1.2
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("DBGSA")

Getting started

Package overview

Popular man pages

afExp: Gene expression profile
avelinkdis: Computing the distance by group average method
b1: Gene set function expression profile
centdis: Computing the distance by gravity method
distable: function to compute the specific distances between different...
distance: distances between case and control group
randdis: Randomly generating some gene expression profiles by gene...
See all...

All man pages Function index File listing

Man pages

afExp: Gene expression profile
avelinkdis: Computing the distance by group average method
b1: Gene set function expression profile
centdis: Computing the distance by gravity method
DBGSA-package: methods of distance-based gene set functional enrichment...
distable: function to compute the specific distances between different...
distance: distances between case and control group
functionall: P values of distance-based gene set enrichment analysis
rand: distances of gene expression obtained by gene resampling
randdis: Randomly generating some gene expression profiles by gene...
valuep: function which computes p values from different phenotypes by...

Functions

DBGSA Man page
DBGSA-package Man page
afExp Man page
avelinkdis Man page Source code
b1 Man page
centdis Man page Source code
distable Man page Source code
distance Man page
functionall Man page Source code
rand Man page
randdis Man page Source code
valuep Man page Source code

Files

MD5
R
R/valuep.R
R/randdis.R
R/functionall.R
R/distable.R
R/centdis.R
R/avelinkdis.R
NAMESPACE
man
man/valuep.Rd
man/randdis.Rd
man/rand.Rd
man/functionall.Rd
man/distance.Rd
man/distable.Rd
man/DBGSA-package.Rd
man/centdis.Rd
man/b1.Rd
man/avelinkdis.Rd
man/afExp.Rd
DESCRIPTION
data
data/rand.rda
data/distance.rda
data/datalist
data/b1.txt.gz
data/afExp.rda
DBGSA documentation built on May 20, 2017, 2:10 a.m.

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