Sequence Clustering with Discrete-Output HMMs

assign.clusters | Cluster Assignment |

cluster.bic | HMM BIC |

count.parameters | Count HMM Parameters |

emission.heatmap | Heatmap Emission Probabilities |

hmm.clust | DBHC Algorithm |

model.ll | Get HMM Log Likelihood |

partition.bic | Partition BIC |

select.seeds | Seed Selection Procedure |

seq2hmm.ll | Sequence-to-HMM Likelihood |

size.search | Size Search Algorithm |

smooth.hmm | Smooth HMM Parameters |

smooth.probabilities | Smooth Probabilities |

transition.heatmap | Heatmap Transition Probabilities |

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