DCODE: List Linear n-Peptide Constraints for Overlapping Protein Regions

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Traversal graph algorithm for listing linear n-peptide constraints for overlapping protein regions. (Lebre and Gascuel, The combinatorics of overlapping genes, freely available from arXiv at : http://arxiv.org/abs/1602.04971).

Author
Sophie Lebre
Date of publication
2016-03-10 17:55:18
Maintainer
Sophie Lebre <sophie.lebre@umontpellier.fr>
License
GPL (>= 2)
Version
1.0

View on CRAN

Man pages

build_data
Function to build the elements 'aaList', 'geneticCode',...
DCODE-internal
Internal DCODE Functions
DCODE-package
List Linear n-Peptide Constraints for Overlapping Protein...
getConstraint
Function giving the linear constraint associated with the...

Files in this package

DCODE
DCODE/NAMESPACE
DCODE/R
DCODE/R/build_data.R
DCODE/R/DCODE-internal.R
DCODE/R/getConstraint_rec2.R
DCODE/R/printConstraint.R
DCODE/R/toPep.R
DCODE/R/getConstraint.R
DCODE/R/getAllSeqs.R
DCODE/R/getConstraint_rec1.R
DCODE/R/deleteStops.R
DCODE/R/posLecturef2.R
DCODE/R/compRev.R
DCODE/R/posLecturef1.R
DCODE/MD5
DCODE/DESCRIPTION
DCODE/man
DCODE/man/getConstraint.Rd
DCODE/man/build_data.Rd
DCODE/man/DCODE-package.Rd
DCODE/man/DCODE-internal.Rd