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DDRTree: Learning Principal Graphs with DDRTree
Provides an implementation of the framework of reversed graph embedding (RGE) which projects data into a reduced dimensional space while constructs a principal tree which passes through the middle of the data simultaneously. DDRTree shows superiority to alternatives (Wishbone, DPT) for inferring the ordering as well as the intrinsic structure of the single cell genomics data. In general, it could be used to reconstruct the temporal progression as well as bifurcation structure of any datatype.
Getting started
Browse package contents
Package details |
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| Author | Xiaojie Qiu, Cole Trapnell, Qi Mao, Li Wang |
| Maintainer | Xiaojie Qiu <xqiu@uw.edu> |
| License | Artistic License 2.0 |
| Version | 0.1.5 |
| Package repository | View on CRAN |
| Installation |
Install the latest version of this package by entering the following in R:
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