DDRTree: Learning Principal Graphs with DDRTree

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Project data into a reduced dimensional space and construct a principal graph from the reduced dimension.

Author
Xiaojie Qiu, Cole Trapnell, Qi Mao, Li Wang
Date of publication
2016-07-26 02:03:54
Maintainer
Xiaojie Qiu <xqiu@uw.edu>
License
Artistic License 2.0
Version
0.1.4

View on CRAN

Man pages

DDRTree
Perform DDRTree construction
get_major_eigenvalue
Get the top L eigenvalues
pca_projection_R
Compute the PCA projection
sqdist_R
calculate the square distance between a, b

Files in this package

DDRTree
DDRTree/src
DDRTree/src/DDRTree.cpp
DDRTree/src/DDRTree.h
DDRTree/src/RcppExports.cpp
DDRTree/NAMESPACE
DDRTree/R
DDRTree/R/DDRTree.R
DDRTree/R/RcppExports.R
DDRTree/R/help.R
DDRTree/README.md
DDRTree/MD5
DDRTree/DESCRIPTION
DDRTree/man
DDRTree/man/DDRTree.Rd
DDRTree/man/sqdist_R.Rd
DDRTree/man/get_major_eigenvalue.Rd
DDRTree/man/pca_projection_R.Rd