run_pipeline: Run the main pipeline for getting drugs from differentail...
In DFD: Extract Drugs from Differential Expression Data from LINCS Database
run_pipeline R Documentation
Run the main pipeline for getting drugs from differentail expression profile
Description
The function is used to run the main pipeline by extracting the drug list given differential expressed genes
Usage
run_pipeline(degs_path, output_path = NULL)
Arguments
degs_path
path to csv file containing degs see example file at https://raw.githubusercontent.com/MohmedSoudy/datasharing/master/differential-expression.csv
output_path
absolute path to output directory
Value
significant drug data frame after the re-ranking step
Author(s)
Mohamed Soudy Mohmedsoudy2009@gmail.com
DFD documentation built on April 3, 2025, 6:15 p.m.
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| run_pipeline | R Documentation |
Run the main pipeline for getting drugs from differentail expression profile
Description
The function is used to run the main pipeline by extracting the drug list given differential expressed genes
Usage
run_pipeline(degs_path, output_path = NULL)
Arguments
degs_path |
path to csv file containing degs see example file at https://raw.githubusercontent.com/MohmedSoudy/datasharing/master/differential-expression.csv |
output_path |
absolute path to output directory |
Value
significant drug data frame after the re-ranking step
Author(s)
Mohamed Soudy Mohmedsoudy2009@gmail.com
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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