summary.map.genotypes: Summary of best genotypes

In DNAmixturesLite: Statistical Inference for Mixed Traces of DNA (Lite-Version)

Summary of best genotypes

Description

The maximum posterior configurations of genotypes as returned by map.genotypes, but in the format of pairs of alleles rather than raw allelecounts. When a subset of alleles are considered, then the value NA is used to denote an allele outside this subset; in particular, if type="seen" is used in map.genotypes, then NA corresponds to the allele having dropped out in all of the mixtures included in the model.

Usage

## S3 method for class 'map.genotypes'
summary(object, ...)

## S3 method for class 'summary.map.genotypes'
print(x, markers = names(x), ...)

Arguments

object	An object returned by map.genotypes.
...	arguments passed on to other methods.
x	An object of class "summary.map.genotypes", typically returned by summary.map.genotypes.
markers	Optionally, a subset of markers to print

Value

A data.frame with two columns per unknown contributor under consideration and a column Prob containing the probability of the configuration.

Author(s)

Therese Graversen

See Also

map.genotypes

DNAmixturesLite documentation built on March 31, 2023, 8:21 p.m.