getFilteredData: Filter the dataset by removing lowly expressed genes and...

In DUBStepR: Correlation-Based Feature Selection for Single-Cell RNA Sequencing Data

Description

Filter the dataset by removing lowly expressed genes and mitochondrial, spike-in and ribosomal genes

Usage

getFilteredData(data, min.cells = 0.05 * ncol(data), species = "human")

Arguments

data	gene expression matrix
min.cells	gene expression matrix
species	species to use for gene filtering: "human" (default), "mouse" and "rat"

Value

filtered gene-expression matrix

DUBStepR documentation built on Oct. 5, 2021, 5:08 p.m.