API for DamageDetective
Detecting Damaged Cells in Single-Cell RNA Sequencing Data
| Global functions | |
|---|---|
| .assign_damage_levels | Source code |
| .check_inputs | Source code |
| .check_penalty_inputs | Source code |
| .check_simulate_inputs | Source code |
| .combine_matrices | Source code |
| .combine_true_and_artificial_cells | Source code |
| .compile_pANN | Source code |
| .compute_dTNN | Source code |
| .compute_mito_ribo | Source code |
| .compute_pANN | Source code |
| .compute_qc_metrics | Source code |
| .create_damage_label | Source code |
| .extract_damaged_cells | Source code |
| .filter_cells_by_mito | Source code |
| .finalise_output | Source code |
| .finalise_penalty_output | Source code |
| .find_knn | Source code |
| .generate_qc_summary | Source code |
| .get_beta_shape_parameters | Source code |
| .get_damage_ranges | Source code |
| .get_steepness_value | Source code |
| .iterate_penalties | Source code |
| .perform_pca | Source code |
| .perturb_cells | Source code |
| .prepare_penalty_data | Source code |
| .scale_damage | Source code |
| .select_damaged_cells | Source code |
| .simulate_damage | Source code |
| .store_penalty_results | Source code |
| detect_damage | Man page Source code |
| get_organism_indices | Man page Source code |
| plot_altered_counts | Man page Source code |
| plot_detection_outcome | Man page Source code |
| plot_ribosomal_penalty | Man page Source code |
| plot_simulation_outcome | Man page Source code |
| plot_unaltered_counts | Man page Source code |
| select_penalty | Man page Source code |
| simulate_counts | Man page Source code |
| test_counts | Man page |
