plot_altered_counts: plot_altered_counts

In DamageDetective: Detecting Damaged Cells in Single-Cell RNA Sequencing Data

plot_altered_counts

Description

Function to generate a scatter plot of quality control metrics for altered data.

Usage

plot_altered_counts(
  qc_summary,
  palette = c("grey", "#7023FD", "#E60006"),
  target_damage = c(0.5, 1)
)

Arguments

qc_summary	A data frame containing the quality control summary for cells.
palette	A character vector specifying the color gradient used for coloring the damage levels.
target_damage	Numeric vector specifying the target damage levels for color scaling.

Details

This function visualizes the distribution of features and proportions of mitochondrial and ribosomal genes for cells with altered counts. It also adds a reference point to help assess the quality of altered data against the expected distributions.

Value

A list containing the plot object and the reference row used for comparison.

DamageDetective documentation built on April 4, 2025, 2:39 a.m.