Description Usage Arguments Value Examples
Dealing GPL570 (Affymetrix Human Genome U133 Plus 2.0 Array) RAW.tar file using the robust multi-array average expression measure
1 | DealGPL570(file, type = "probeIDAndGeneSymbol")
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file |
a file name specified by either a variable of mode character, or a double-quoted string, which is of 'GSE*_RAW.tar' which is of platform GPL570. |
type |
a character string indicating which type of data frame is to be outputted. One of 'probeIDAndGeneSymbol'(default), 'probeID', or 'geneSymbol'. |
a expression profile.
1 2 3 4 5 6 7 8 | # You can put your own `GSE*_RAW.tar` under the working directory,
# now we download one online and have a test.
# Next step would run for about 30s, so you can try it yourself or view the vignettes
GEOquery::getGEOSuppFiles("GSE104683", makeDirectory = FALSE, baseDir = tempdir())
file <- list.files(path = tempdir(), pattern = "GSE104683_RAW.tar", full.names = TRUE)
file
result <- DealGPL570(file = file)
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