DealGPL570: Dealing GPL570 (Affymetrix Human Genome U133 Plus 2.0 Array)...
In DealGPL570: Dealing GPL570 RAW.tar file
Description
Usage
Arguments
Value
Examples
Description
Dealing GPL570 (Affymetrix Human Genome U133 Plus 2.0 Array) RAW.tar file using the robust multi-array average expression measure
Usage
1
DealGPL570(file, type = "probeIDAndGeneSymbol")
Arguments
file
a file name specified by either a variable of mode character, or a double-quoted string, which is of 'GSE*_RAW.tar' which is of platform GPL570.
type
a character string indicating which type of data frame is to be outputted. One of 'probeIDAndGeneSymbol'(default), 'probeID', or 'geneSymbol'.
Value
a expression profile.
Examples
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# You can put your own `GSE*_RAW.tar` under the working directory,
# now we download one online and have a test.
# Next step would run for about 30s, so you can try it yourself or view the vignettes
GEOquery::getGEOSuppFiles("GSE104683", makeDirectory = FALSE, baseDir = tempdir())
file <- list.files(path = tempdir(), pattern = "GSE104683_RAW.tar", full.names = TRUE)
file
result <- DealGPL570(file = file)
DealGPL570 documentation built on Dec. 11, 2019, 9:11 a.m.
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Description Usage Arguments Value Examples
Description
Dealing GPL570 (Affymetrix Human Genome U133 Plus 2.0 Array) RAW.tar file using the robust multi-array average expression measure
Usage
1 | DealGPL570(file, type = "probeIDAndGeneSymbol")
|
Arguments
file |
a file name specified by either a variable of mode character, or a double-quoted string, which is of 'GSE*_RAW.tar' which is of platform GPL570. |
type |
a character string indicating which type of data frame is to be outputted. One of 'probeIDAndGeneSymbol'(default), 'probeID', or 'geneSymbol'. |
Value
a expression profile.
Examples
1 2 3 4 5 6 7 8 | # You can put your own `GSE*_RAW.tar` under the working directory,
# now we download one online and have a test.
# Next step would run for about 30s, so you can try it yourself or view the vignettes
GEOquery::getGEOSuppFiles("GSE104683", makeDirectory = FALSE, baseDir = tempdir())
file <- list.files(path = tempdir(), pattern = "GSE104683_RAW.tar", full.names = TRUE)
file
result <- DealGPL570(file = file)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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