cystic_fibrosis_snps_df: Cystic Fibrosis SNP

In DigestiveDataSets: A Curated Collection of Digestive System and Gastrointestinal Disease Datasets

Cystic Fibrosis SNP

Description

This dataset, cystic_fibrosis_snps_df, is a data frame containing genetic association data for cystic fibrosis, including a case-control indicator and 23 single nucleotide polymorphisms (SNPs) with specified inter-marker distances. The dataset contains 186 observations across 24 variables.

Usage

data(cystic_fibrosis_snps_df)

Format

A data frame with 186 observations and 24 variables:

y

Integer case-control indicator

loc1

Integer SNP genotype at location 1

loc2

Integer SNP genotype at location 2

loc3

Integer SNP genotype at location 3

loc4

Integer SNP genotype at location 4

loc5

Integer SNP genotype at location 5

loc6

Integer SNP genotype at location 6

loc7

Integer SNP genotype at location 7

loc8

Integer SNP genotype at location 8

loc9

Integer SNP genotype at location 9

loc10

Integer SNP genotype at location 10

loc11

Integer SNP genotype at location 11

loc12

Integer SNP genotype at location 12

loc13

Integer SNP genotype at location 13

loc14

Integer SNP genotype at location 14

loc15

Integer SNP genotype at location 15

loc16

Integer SNP genotype at location 16

loc17

Integer SNP genotype at location 17

loc18

Integer SNP genotype at location 18

loc19

Integer SNP genotype at location 19

loc20

Integer SNP genotype at location 20

loc21

Integer SNP genotype at location 21

loc22

Integer SNP genotype at location 22

loc23

Integer SNP genotype at location 23

Details

The dataset name has been kept as 'cystic_fibrosis_snps_df' to avoid confusion with other datasets in the R ecosystem. This naming convention helps distinguish this dataset as part of the DigestiveDataSets package and assists users in identifying its specific characteristics. The suffix 'df' indicates that the dataset is a data frame. The original content has not been modified in any way.

Source

Data taken from the gap.datasets package version 0.0.6. Original source: Liu JS, Sabatti C, Teng J, Keats BJB, Risch N (2001). "Bayesian Analysis of Haplotypes for Linkage Disequilibrium Mapping". Genome Research, 11:1716–1724.

DigestiveDataSets documentation built on June 8, 2025, 1:04 p.m.