DiversityOccupancy: Building Diversity Models from Multiple Species Occupancy Models
Version 1.0.6

Predictions of alpha diversity are fitted from presence data, first abundance is modeled from occupancy models and then, several diversity indices are calculated and finally GLM models are used to predict diversity in different environments and select priority areas.

Browse man pages Browse package API and functions Browse package files

AuthorDerek Corcoran [aut, cre], Dylan Kesler [aut], Lisa Webb [aut], Giorgia Graells [aut], Nicole Michel [ctb], Mike Meredith [ctb]
Date of publication2017-03-02 18:32:36
MaintainerDerek Corcoran <derek.corcoran.barrios@gmail.com>
LicenseGPL-3
Version1.0.6
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("DiversityOccupancy")

Man pages

batchoccu: Fits occupancy models for multiple species detection history
batchoccuavg: Fits occupancy models for multiple species detection history...
Birdstack: Raster Stack with five variables measured in Pohnpei Island...
Daily_Cov: Seven covariables measured at 120 survey stations in an...
diversityoccu: Calculates alpha diversity from multiple species occupancy...
diversity.predict: Makes a spacially explicit prediction of the occupancy of...
IslandBirds: Occupancy data of 5 bird species in Micronesia.
model.diversity: Find the best GLM model explaining the alpha divesity of the...
occupancy.predict: Predicts occupancy for all the species in a batchoccupancy...
responseplot.abund: plot the response of an abundance model to the change of...
responseplot.diver: plot the response of the calculated alpha diversity to the...
responseplot.occu: plot the response of an occupancy model to the change of...
siteCov: Nine covariables measured at 120 survey stations in an island...

Functions

Birdstack Man page
Daily_Cov Man page
IslandBirds Man page
batchoccu Man page Source code
batchoccuavg Man page Source code
diversity.predict Man page Source code
diversityoccu Man page Source code
model.diversity Man page Source code
occupancy.predict Man page Source code
responseplot.abund Man page Source code
responseplot.diver Man page Source code
responseplot.occu Man page Source code
siteCov Man page

Files

inst
inst/doc
inst/doc/my-vignette.html
inst/doc/my-vignette.Rmd
NAMESPACE
data
data/siteCov.rda
data/Birdstack.rda
data/Daily_Cov.rda
data/IslandBirds.rda
R
R/DiversityOccu.R
R/Datasets.R
R/Plotfunctions.R
vignettes
vignettes/my-vignette.Rmd
README.md
MD5
build
build/vignette.rds
DESCRIPTION
man
man/diversity.predict.Rd
man/Daily_Cov.Rd
man/responseplot.abund.Rd
man/diversityoccu.Rd
man/batchoccuavg.Rd
man/siteCov.Rd
man/occupancy.predict.Rd
man/IslandBirds.Rd
man/model.diversity.Rd
man/batchoccu.Rd
man/Birdstack.Rd
man/responseplot.diver.Rd
man/responseplot.occu.Rd
DiversityOccupancy documentation built on May 20, 2017, 1:20 a.m.