DiversityOccupancy: Building Diversity Models from Multiple Species Occupancy Models

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Predictions of alpha diversity are fitted from presence data, first abundance is modeled from occupancy models and then, several diversity indices are calculated and finally GLM models are used to predict diversity in different environments and select priority areas.

Author
Derek Corcoran [aut, cre], Dylan Kesler [aut], Nicole Michel [ctb], Mike Meredith [ctb]
Date of publication
2016-06-19 09:47:29
Maintainer
Derek Corcoran <derek.corcoran.barrios@gmail.com>
License
GPL-3
Version
1.0.5

View on CRAN

Man pages

batchoccu
Fits occupancy models for multiple species detection history
Birdstack
Raster Stack with five variables measured in Pohnpei Island...
Daily_Cov
Seven covariables measured at 120 survey stations in an...
diversityoccu
Calculates alpha diversity from multiple species occupancy...
diversity.predict
Makes a spacially explicit prediction of the occupancy of...
IslandBirds
Occupancy data of 5 bird species in Micronesia.
model.diversity
Find the best GLM model explaining the alpha divesity of the...
occupancy.predict
Predicts occupancy for all the species in a batchoccupancy...
responseplot.abund
plot the response of an abundance model to the change of...
responseplot.diver
plot the response of the calculated alpha diversity to the...
responseplot.occu
plot the response of an occupancy model to the change of...
siteCov
Nine covariables measured at 120 survey stations in an island...

Files in this package

DiversityOccupancy
DiversityOccupancy/inst
DiversityOccupancy/inst/doc
DiversityOccupancy/inst/doc/my-vignette.html
DiversityOccupancy/inst/doc/my-vignette.Rmd
DiversityOccupancy/NAMESPACE
DiversityOccupancy/data
DiversityOccupancy/data/siteCov.rda
DiversityOccupancy/data/Birdstack.rda
DiversityOccupancy/data/Daily_Cov.rda
DiversityOccupancy/data/IslandBirds.rda
DiversityOccupancy/R
DiversityOccupancy/R/DiversityOccu.R
DiversityOccupancy/R/Datasets.R
DiversityOccupancy/R/Plotfunctions.R
DiversityOccupancy/vignettes
DiversityOccupancy/vignettes/my-vignette.Rmd
DiversityOccupancy/README.md
DiversityOccupancy/MD5
DiversityOccupancy/build
DiversityOccupancy/build/vignette.rds
DiversityOccupancy/DESCRIPTION
DiversityOccupancy/man
DiversityOccupancy/man/diversity.predict.Rd
DiversityOccupancy/man/Daily_Cov.Rd
DiversityOccupancy/man/responseplot.abund.Rd
DiversityOccupancy/man/diversityoccu.Rd
DiversityOccupancy/man/siteCov.Rd
DiversityOccupancy/man/occupancy.predict.Rd
DiversityOccupancy/man/IslandBirds.Rd
DiversityOccupancy/man/model.diversity.Rd
DiversityOccupancy/man/batchoccu.Rd
DiversityOccupancy/man/Birdstack.Rd
DiversityOccupancy/man/responseplot.diver.Rd
DiversityOccupancy/man/responseplot.occu.Rd