NEWS.md

In DrugUtilisation: Summarise Patient-Level Drug Utilisation in Data Mapped to the OMOP Common Data Model

DrugUtilisation 1.0.4

• Fix plotDrugUtilisation combining different cdm_name by @catalamarti

DrugUtilisation 1.0.3

• Skip some tests for regression in duckdb by @catalamarti

DrugUtilisation 1.0.2

• Add examples of atc and ingredient documentation by @catalamarti
• Add summariseTreatment input information in vignette by @KimLopezGuell
• Drug restart documentation by @KimLopezGuell
• Add drug utilisation documentation by @KimLopezGuell
• Update equation daily dose vignette by @KimLopezGuell
• Compatibility with omopgenerics 1.2.0 by @catalamarti
• Homogenise examples by @catalamarti

DrugUtilisation 1.0.1

• lifecycle stable by @catalamarti
• Correct settings to not be NA by @catalamarti
• add .options argument by @catalamarti

DrugUtilisation 1.0.0

• Stable release.
• plotPPC between 0 and 100% by @catalamarti
• add observation_period_id in erafy by @catalamarti
• use window_name as factor in plotTreatment/Indication by @catalamarti
• remove lifecycle tags 1.0.0 by @catalamarti
• use mockDisconnect in all tests by @catalamarti
• Change default of tables to hide all settings by @catalamarti
• Test validateNameStyle by @catalamarti
• update requirePriorDrugWashout to <= to align with IncidencePrevalence by @catalamarti

DrugUtilisation 0.8.3

• Add +1L to initialExposureDuration to calculate duration as end - start + 1 by @catalamarti

DrugUtilisation 0.8.2

• Fix snowflake edge case with duplicated prescriptions by @catalamarti

DrugUtilisation 0.8.1

• Arguments recorded in summarise* functions by @catalamarti
• Improved performance of addIndication, addTreatment, summariseIndication, summariseTreatment by @catalamarti

DrugUtilisation 0.8.0

New features

• Add argument ... to generateATC/IngredientCohortSet by @catalamarti
• benchmarkDrugUtilisation to test all functions by @MimiYuchenGuo
• Add confidence intervals to PPC by @catalamarti
• Export erafyCohort by @catalamarti
• Add numberExposures and daysPrescribed to generate functions by @catalamarti
• Add subsetCohort and subsetCohortId arguments to cohort creation functions by @catalamarti
• New function: addDrugRestart by @catalamarti
• Add initialExposureDuration by @catalamarti
• add cohortId to summarise* functions by @catalamarti
• addDaysPrescribed by @catalamarti
• plotDrugUtilisation by @catalamarti

Minor updates

• Account for omopgenerics 0.4.0 by @catalamarti
• Add messages about dropped records in cohort creation by @catalamarti
• Refactor of table functions following visOmopResults 0.5.0 release by @catalamart
• Cast settings to characters by @catalamarti
• checkVersion utility function for tables and plots by @catalamarti
• Deprecation warnings to errors for deprecated arguments in geenrateDrugUtilisation by @catalamarti
• Add message if too many indications by @catalamarti
• not treated -> untreated by @catalamarti
• warn overwrite columns by @catalamarti
• Use omopgenerics assert function by @catalamarti
• add documentation helpers for consistent argument documentation by @catalamarti
• exposedTime -> daysExposed by @catalamarti
• Fix cast warning in mock by @catalamarti
• test addDaysPrescribed by @catalamarti
• refactor plots to use visOmopResults plot tools by @catalamarti

Bug fix

• allow integer64 in sampleSize by @catalamarti

DrugUtilisation 0.7.0

• Deprecate dose specific functions: addDailyDose, addRoute, stratifyByUnit.

• Deprecate drug use functions: addDrugUse, summariseDrugUse.

• Rename dailyDoseCoverage -> summariseDoseCoverage.

• Refactor of addIndication to create a categorical variable per window.

• New functionality summariseProportionOfPatientsCovered, tableProportionOfPatientsCovered and plotProportionOfPatientsCovered.

• Create require* functions.

• New functionality summariseDrugRestart, tableDrugRestart and plotDrugRestart.

• New functionality addDrugUtilisation, summariseDrugUtilisation and tableDrugUtilisation

DrugUtilisation documentation built on July 3, 2025, 1:08 a.m.