calcDyspiaStatCumulativeBatch: Calculates DysPIA statistic values for the gene pair sets

In DysPIA: Dysregulated Pathway Identification Analysis

Description

Calculates DysPIA statistic values for the gene pair sets

Usage

calcDyspiaStatCumulativeBatch(
  stats,
  DyspiaParam,
  pathwayScores,
  pathwaysSizes,
  iterations,
  seed
)

Arguments

stats	Named numeric vector with gene pair-level statistics sorted in decreasing order (order is not checked).
DyspiaParam	DysPIA weight parameter (0 is unweighted, suggested value is 1).
pathwayScores	Vector with enrichment scores for the pathways in the database.
pathwaysSizes	Vector of pathway sizes.
iterations	Number of iterations.
seed	Seed vector

Value

List of DysPIA statistics for gene pair sets.

DysPIA documentation built on July 10, 2020, 9:06 a.m.