Description Usage Format Source References Examples
The list data has five compoents: admixed
, anc1
, anc2
,
true.local.ancestry
, position
.
The data matrixes were simulated data using the allele frequencies from
HapMap Population CEU (Utah residents with Northern and Western
European ancestry from the CEPH collection) and YRI (Yoruba in
Ibadan, Nigeria (West Africa)).
1 |
A list consisting of admixed
(2300 rows, 30 columns),
anc1
(2300 rows, 60 columns), anc2
(2300 rows, 60
columns), true.local.ancestry
(2300 rows, 60 columns), and
position
(a vector of length 2300).
The elements of the matrixes (admixed
, anc1
, and2
) are the genotypes
being coded as the number of copies of the variant allele present, 0,
1 or 2. The elements of matrix true.local.ancestry are the true local ancestries being coded
as alleles identification from ancestries 1 or 2. The physical
positions (in base pairs unit) are in position.
none
Yang, J. J., LI, J., Buu, A., and Williams, L. K. (2013) Efficient Inference of Local Ancestry. Bioinformatics. doi: 10.1093/bioinformatics/btt488
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