EMC: Evolutionary Monte Carlo (EMC) algorithm
Version 1.3

random walk Metropolis, Metropolis Hasting, parallel tempering, evolutionary Monte Carlo, temperature ladder construction and placement

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AuthorGopi Goswami <goswami@stat.harvard.edu>
Date of publication2011-12-11 17:42:15
MaintainerGopi Goswami <grgoswami@gmail.com>
LicenseGPL (>= 2)
Version1.3
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("EMC")

Man pages

evolMonteCarlo: evolutionary Monte Carlo algorithm
findMaxTemper: Find the maximum temperature for parallel MCMC chains
MetropolisHastings: The Metropolis-Hastings algorithm
parallelTempering: The parallel Tempering algorithm
placeTempers: Place the intermediate temperatures between the temperature...
print: The printing family of functions
randomWalkMetropolis: The Random Walk Metropolis algorithm
utilsForExamples: The utility function(s) for examples

Functions

ARHatIS Source code
CigarShapedFuncGenerator1 Man page Source code
CigarShapedFuncGenerator2 Man page Source code
ISObj Source code
MCObj Source code
MetropolisHastings Man page Source code
TOEMCMain Source code
VShapedFuncGenerator Man page Source code
WShapedFuncGenerator Man page Source code
buildLadder Source code
check.MHBlockNTimes Source code
check.MHBlocks Source code
check.MHPropNewFunc Source code
check.MHRWMPropDisp Source code
check.MHRWMPropDispArr Source code
check.MHRWMPropDispMat Source code
check.MHRWMPropDispVec Source code
check.SCControls.do Source code
check.SCRWMNTimes Source code
check.SCRWMPropSD Source code
check.acceptRatioLimits Source code
check.acceptRatios Source code
check.func.do Source code
check.isMHRWMVec Source code
check.levelsSaveSamplesFor Source code
check.logMHPropDensFunc Source code
check.logTarDensFunc Source code
check.logical Source code
check.mSCList Source code
check.mSCList.do Source code
check.mSTList Source code
check.mSTList.do Source code
check.moveList.do Source code
check.moveList.fill Source code
check.moveNTimesList Source code
check.moveProbsList Source code
check.numericWithLLim Source code
check.startingVals Source code
check.startingValsMat Source code
check.startingValsVec Source code
check.statsFuncList Source code
check.temperLadder Source code
check.timeInSecs Source code
collectVarnames Source code
doCall Source code
evolMonteCarlo Man page Source code
fatal Source code
findMaxTemper Man page Source code
findMaxTemper.do Source code
findMaxTemper.do.1 Source code
findMaxTemper.do.2 Source code
get.crossoverMovenames Source code
get.defaults.selectionCodes Source code
get.defaults.selectionTempers Source code
get.detailedAcceptRatios Source code
get.detailedAcceptRatios.CE Source code
get.detailedAcceptRatios.MH Source code
get.detailedAcceptRatios.various Source code
get.implementedMovenames Source code
get.implementedMovesList Source code
get.infoListComp Source code
get.min.max.mat Source code
get.postBurnIn Source code
get.row.col Source code
get.selectionCodes Source code
get.specialMovenames Source code
get.temperLadder Source code
kernelBartlett Source code
kernelParzen Source code
listToDF Source code
nfo.find.1 Source code
nfo.find.2 Source code
nfo.find.3 Source code
nfo.place.1 Source code
nfo.place.2 Source code
nfo.place.3 Source code
nfo.place.4 Source code
onLoad Source code
oneIterMHFuncGen Source code
oneIterMHFuncGen.checkAlpha Source code
oneIterMHFuncGen.checkLogDens Source code
oneIterMHFuncGen.checkPropDens Source code
oneIterMHFuncGen.checkPropNew Source code
parallelTempering Man page Source code
placeTempers Man page Source code
placeTempers.do Source code
placeTempers.do.1 Source code
placeTempers.do.2 Source code
placeTempers.do.3 Source code
placeTempers.do.4 Source code
print.EMC Man page Source code
print.EMCMaxTemper Man page Source code
print.EMCPlaceTempers Man page Source code
procAcceptRatios1 Source code
procAcceptRatios2 Source code
procFinal1 Source code
randomWalkMetropolis Man page Source code
roundDF Source code
str1 Source code
threeDimNormalFuncGenerator Man page Source code
twentyModeFuncGenerator Man page Source code
uniModeFuncGenerator Man page Source code
update.infoListComp Source code

Files

MD5
TODO
DESCRIPTION
man
man/randomWalkMetropolis.Rd
man/print.Rd
man/evolMonteCarlo.Rd
man/parallelTempering.Rd
man/utilsForExamples.Rd
man/findMaxTemper.Rd
man/MetropolisHastings.Rd
man/placeTempers.Rd
README
src
src/objects.c
src/utils.h
src/Makevars
src/objects.h
src/utils.c
NAMESPACE
etc
etc/common.1.Rd
etc/common.2.Rd
etc/common.3.Rd
ChangeLog
R
R/zzz.R
R/ladder.R
R/doEMC.R
R/funcGenerators.R
R/common.R
EMC documentation built on May 19, 2017, 4 p.m.