| add.env | Takes an enmtools.species object and a set of environment... |
| assert.extras | Assert that the extra packages needed for an ENMTools... |
| background.buffer | Takes a set of points, a buffer radius, a buffer type, and a... |
| background.points.buffer | Takes a set of points, a buffer radius, a sample size, and a... |
| background.raster.buffer | Takes a set of points, a buffer radius, and a mask and... |
| background.shape.buffer | Takes a set of points and a buffer radius, and returns a... |
| background.test | background.test Conduct a background test (also called a... |
| calc.B1 | calc.B1, Calculates standardized version of Levins (1968) B1... |
| calc.B2 | calc.B2, Calculates standardized version of Levins (1968) B2... |
| check.bg | Takes an emtools.species object and adds background points if... |
| check.clade | Checking for complians of an enmtools.clade object |
| check.env | Automating some basic tasks for using a raster stack for... |
| check.extras | Check that the extra packages needed for an ENMTools function... |
| check.species | Checking compliance for an object of class enmtools.species. |
| clamp.env | Takes an emtools.model object and a set of environment layers... |
| combine.species | Takes a list of enmtools.species objects and combines them... |
| drop.species | Takes a an ENMTools clade object and a vector of species... |
| enmtools.aoc | Takes an overlap matrix and a tree and runs permutation tests... |
| enmtools.bc | Takes an emtools.species object with presence and background... |
| enmtools.calibrate | Takes an emtools.model object, and reformats it to run... |
| enmtools.clade | Defining a class for enmtools.clade. Each clade gets: |
| enmtools.dm | Takes an emtools.species object with presence and background... |
| enmtools.ecospat.bg | enmtools.ecospat.bg, Runs an ecospat background/similarity... |
| enmtools.ecospat.id | enmtools.ecospat.id, Runs an ecospat identity test using... |
| enmtools.gam | Takes an emtools.species object with presence and background... |
| enmtools.glm | Takes an enmtools.species object with presence and background... |
| enmtools.hypervolume | THIS FUNCTION IS CURRENTLY DISABLED. Takes an... |
| enmtools.maxent | Takes an emtools.species object with presence and background... |
| enmtools.rf | Takes an emtools.species object with presence and background... |
| enmtools.rf.ranger | Takes an emtools.species object with presence and background... |
| enmtools.species | Defining a class for enmtools.species. |
| enmtools.vip | Takes an enmtools.model object, and performs variable... |
| env.breadth | Calculates breadth of a model in environment space using... |
| env.evaluate | Calculates evaluation metrics (AUC, etc.) using latin... |
| env.overlap | Calculates overlap between models in environment space using... |
| euro.worldclim | Worldclim data for Europe |
| find.extras | Find the extra packages needed for an ENMTools function |
| find.extras.missing | Find the extra packages needed for an ENMTools function that... |
| geog.range.overlap | Takes two emtools.species objects with range rasters,... |
| hypervolume.overlap | Takes an emtools.species object and environmental layers, and... |
| iberolacerta.clade | GBIF data for a clade of Iberolacerta lizards from spain |
| identity.test | identity.test Conduct a niche identity/equivalency test as... |
| install.extras | install.extras |
| interactive.plot | Generic function for making interactive plots of ENMTools... |
| interactive.plot.enmtools.model | Plot an enmtools.model object on an interactive map |
| interactive.plot.enmtools.species | Plot an enmtools.species object on an interactive map |
| marginal.plots | marginal.plots Plots the marginal response of a model to an... |
| moses.list | Takes a list of enmtools.species objects and uses model... |
| multistack.pca | multistack.pca, simultaneous PCA on more than one stack of... |
| node.overlap | Takes an overlap matrix and a tree and returns average... |
| point.overlap | Takes two emtools.species objects with range rasters,... |
| rangebreak.blob | rangebreak.blob Conduct a blob rangebreak test as described... |
| rangebreak.linear | rangebreak.linear Conduct a linear rangebreak test as... |
| rangebreak.ribbon | rangebreak.ribbon Conduct a ribbon rangebreak test as... |
| raster.breadth | raster.breadth, applies measures of niche breadth to an ENM |
| raster.cor | Calculates the correlation coefficient between two rasters. |
| raster.cor.matrix | Takes a raster stack and returns a data frame containing... |
| raster.cor.plot | Takes a raster stack and returns a data frame containing... |
| raster.overlap | raster.overlap, measures overlap between two ENMs |
| raster.pca | raster.pca, PCA on a set of environmental rasters |
| raster.resid | raster.resid Measure standardized residuals from a linear... |
| raster.standardize | raster.standardize, standardizes all values in a raster file |
| rasterToPoints2 | get terra to produce same output as raster::rasterToPoints |
| sim.points | Simulate a point process from an enmtools.model object |
| species.from.file | Takes a csv file and uses it to construct one or more... |
| threespace.plot | threespace.plot, A plot that compares the environmental... |
| trimdupes.by.raster | Takes a set of points and a raster mask and returns a data... |
| unwrap_list | export |
| visualize.enm | visualize.enm, Makes a heatmap of suitability of habitat in... |
| visualize.overlap | visualize.overlap, Makes a contour map of suitability of... |
| wrap_list | export |
