enmtools.vip: Takes an enmtools.model object, and performs variable...

In ENMTools: Analysis of Niche Evolution using Niche and Distribution Models

Takes an enmtools.model object, and performs variable importance analyses on it using methods from the vip package

Description

Takes an enmtools.model object, and performs variable importance analyses on it using methods from the vip package

Usage

enmtools.vip(
  model,
  metric = "auc",
  nsim = 10,
  method = "permute",
  verbose = FALSE,
  ...
)

Arguments

model	An enmtools.model object
metric	The metric to use for measuring how variables affect model predictions
nsim	The number of simulations to be run for method "permute"
method	A character string or vector containing any combination of "model", "permute", "shap", or "firm". For details on what these mean, see the vip package help.
verbose	Controls printing of messages
...	Further arguments to be passed to vip's "vi" functions.

Value

An enmtools.vip object

Examples

#install.extras(repos='http://cran.us.r-project.org')
monticola.glm <- enmtools.glm(iberolacerta.clade$species$monticola,
                              env = euro.worldclim,
                              test.prop = 0.3)
if(check.extras("enmtools.vip")) {
  enmtools.vip(monticola.glm)
}

ENMTools documentation built on April 11, 2023, 6:09 p.m.