initialize-Population-method: Initialize method for the 'Population' class
In Ease: Simulating Explicit Population Genetics Models

initialize,Population-method

R Documentation

Initialize method for the `Population` class

Description

Initialize method for the Population class

Usage

## S4 method for signature 'Population'
initialize(
  .Object,
  name,
  size,
  dioecy,
  selfRate,
  demography,
  growthRate,
  initGenoFreq,
  genomeObj,
  initPopSize,
  selectionObj,
  mutMatrixObj
)

Arguments

`.Object`	a `Population` object
`name`	the name of the population.
`size`	the size of the population.
`dioecy`	logical indicating whether the population is dioecious or not (hermaphrodite).
`selfRate`	the selfing rate of the population
`demography`	logical indicating whether the population has stochastic demography (this does not include migration), i.e. non-constant size and potentially population growth or decay, depending on the situation it is in.
`growthRate`	growth rate of the population.
`initGenoFreq`	A row matrix of the size of the genotype number describing the initial allele frequencies common to all simulations
`genomeObj`	a `Genome` object
`initPopSize`	initial population size, knowing that if the demography is extinct, the initial population size will automatically be set equal to the population size.
`selectionObj`	a `Selection` object
`mutMatrixObj`	a `MutationMatrix` object