EasyABC: Efficient Approximate Bayesian Computation Sampling Schemes

Share:

Enables launching a series of simulations of a computer code from the R session, and to retrieve the simulation outputs in an appropriate format for post-processing treatments. Five sequential sampling schemes and three coupled-to-MCMC schemes are implemented.

Author
Franck Jabot, Thierry Faure, Nicolas Dumoulin, Carlo Albert.
Date of publication
2015-09-02 01:45:06
Maintainer
Nicolas Dumoulin <nicolas.dumoulin@irstea.fr>
License
GPL-3
Version
1.5
URLs

View on CRAN

Man pages

ABC_emulation
Rejection sampling scheme for ABC using an emulator
ABC_mcmc
Coupled to MCMC schemes for ABC
ABC_rejection
Rejection sampling scheme for ABC
ABC_sequential
Sequential sampling schemes for ABC
binary_model
Wrapper for a binary executable for non-parallel simulations
binary_model_cluster
Wrapper for a binary executable for parallel simulations
EasyABC-internal
Internal EasyABC objects
EasyABC-package
EasyABC: performing efficient approximate Bayesian...
SABC
Simulated Annealing approach to Approximate Bayesian...
trait_model
Trait model for EasyABC tutorial

Files in this package

EasyABC
EasyABC/inst
EasyABC/inst/doc
EasyABC/inst/doc/EasyABC.Rnw
EasyABC/inst/doc/EasyABC.pdf
EasyABC/src
EasyABC/src/trait_model_rc.cpp
EasyABC/NAMESPACE
EasyABC/CHANGELOG
EasyABC/R
EasyABC/R/binary_model.R
EasyABC/R/EasyABC-internal.R
EasyABC/R/SABC-internal.R
EasyABC/R/binary_model_cluster.R
EasyABC/R/trait_model.R
EasyABC/R/ABC_sequential.R
EasyABC/R/SABC.R
EasyABC/R/ABC_emulation.R
EasyABC/R/ABC_rejection.R
EasyABC/R/ABC_mcmc.R
EasyABC/vignettes
EasyABC/vignettes/Makefile
EasyABC/vignettes/EasyABC.Rnw
EasyABC/vignettes/EasyABC.tex
EasyABC/MD5
EasyABC/build
EasyABC/build/vignette.rds
EasyABC/DESCRIPTION
EasyABC/man
EasyABC/man/SABC.Rd
EasyABC/man/binary_model_cluster.Rd
EasyABC/man/EasyABC-package.Rd
EasyABC/man/binary_model.Rd
EasyABC/man/ABC_mcmc.Rd
EasyABC/man/ABC_emulation.Rd
EasyABC/man/ABC_rejection.Rd
EasyABC/man/EasyABC-internal.Rd
EasyABC/man/trait_model.Rd
EasyABC/man/ABC_sequential.Rd