Files in EcoEnsemble
A General Framework for Combining Ecosystem Models
configure
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
configure.win
R/RcppExports.R
R/DiscrepancyPrior-IndLTPrior-class.R
R/Prior_sampling.R
R/stanmodels.R
R/plot_functions_withdrivers.R
R/EnsemblePrior-class.R
R/fit_ensemble_withdrivers.R
R/fit_ensemble.R
R/prior_functions.R
R/DiscrepancyPrior-IndSTPrior-class.R
R/DiscrepancyPrior-TruthPrior-class.R
R/EnsembleFit-class.R
R/plot_functions.R
R/data.R
R/validation_functions_withdrivers.R
R/generate_simulator_stan_data_withdrivers.R
R/generate_simulator_stan_data.R
R/get_stan_outputs_withdrivers.R
R/EcoEnsemble-package.R
R/get_stan_outputs.R
R/DiscrepancyPrior-ShaSTPrior-class.R
R/EnsembleSample-class.R
R/validation_prior_functions.R
R/EnsembleData-class.R
R/validation_functions.R
src/RcppExports.cpp
src/KF_back.cpp
inst/CITATION
inst/include/stan_meta_header.hpp
inst/doc/ExploringPriors.Rmd
inst/doc/SyntheticData.html
inst/doc/BetaConjugatePrior.R
inst/doc/IncludingDrivers.R
inst/doc/BetaConjugatePrior.html
inst/doc/SyntheticData.Rmd
inst/doc/EcoEnsemble.R
inst/doc/EcoEnsemble.html
inst/doc/SyntheticData.R
inst/doc/ExploringPriors.R
inst/doc/IncludingDrivers.html
inst/doc/ExploringPriors.html
inst/doc/IncludingDrivers.Rmd
inst/doc/BetaConjugatePrior.Rmd
inst/doc/EcoEnsemble.Rmd
inst/stan/ensemble_model_hierarchical.stan
inst/stan/ensemble_model.stan
inst/stan/ensemble_model_hierarchical_withdrivers.stan
inst/stan/ensemble_prior_withdrivers.stan
inst/stan/ensemble_prior_hierarchical_withdrivers.stan
inst/stan/ensemble_prior.stan
inst/stan/ensemble_prior_hierarchical.stan
inst/stan/ensemble_model_withdrivers.stan
inst/stan/include/license.stan
build/vignette.rds
tests/testthat.R
tests/testthat/test-get_stanmodel.R
tests/testthat/test-post_process.R
tests/testthat/test-post_process_withdrivers.R
tests/testthat/test-validation_functions.R
tests/testthat/test-prior_functions.R
tests/testthat/test-prior_coms.R
tests/testthat/test-Prior_sampling.R
vignettes/ExploringPriors.Rmd
vignettes/SyntheticData.Rmd
vignettes/IncludingDrivers.Rmd
vignettes/BetaConjugatePrior.Rmd
vignettes/EcoEnsemble.Rmd
vignettes/data/plot_initial_customised.png
vignettes/data/rhovarplot.png
vignettes/data/rhoplot1.png
vignettes/data/plot_initial_outputs.png
vignettes/data/ExploringPriors_invWishartDensities.RData
vignettes/data/obsplot.png
vignettes/data/p_truth.png
vignettes/data/SyntheticData_AddingModelsData.RData
vignettes/data/ExploringPriors_HierBetaDensities.RData
vignettes/data/drivers_trace.png
vignettes/data/rhomeanplot.png
vignettes/data/ExploringPriors_HierGammaDensities.RData
vignettes/data/p_priors.png
vignettes/data/rhoplot2.png
vignettes/data/SyntheticData_PriorSamples.RData
vignettes/data/p_truth_withdrivers.png
vignettes/data/plot_priors_only.png
vignettes/data/p_priors_beta_conj.png
vignettes/data/output_plot.png
vignettes/data/bgplot.png
vignettes/data/p_NumberOfModels.png
vignettes/data/rhoplot.png
data/northseamsy.RData
man/Sigma_lm.Rd
man/IndSTPrior-class.Rd
man/EnsembleFit-class.Rd
man/EnsembleData-class.Rd
man/fit_ensemble_model.Rd
man/Sigma_obs.Rd
man/ShaSTPrior-class.Rd
man/SSB_miz.Rd
man/IndLTPrior-class.Rd
man/KalmanFilter_back.Rd
man/Sigma_fs.Rd
man/EcoEnsemble-package.Rd
man/EnsembleFit.Rd
man/SSB_fs.Rd
man/get_mcmc_ensemble_model.Rd
man/get_stan_outputs.Rd
man/EnsembleData.Rd
man/TruthPrior-class.Rd
man/EnsembleSample.Rd
man/prior_ensemble_model.Rd
man/Sigma_ewe.Rd
man/SSB_lm.Rd
man/SSB_obs.Rd
man/SSB_ewe.Rd
man/plot.EnsembleSample.Rd
man/Sigma_miz.Rd
man/EnsemblePrior-class.Rd
man/sample_prior.Rd
man/PriorConstructorFunctions.Rd
man/EnsembleSample-class.Rd
man/figures/fitted_model.bmp
