nci: NCI microarray data (chap 14)
In ElemStatLearn: Data Sets, Functions and Examples from the Book: "The Elements of Statistical Learning, Data Mining, Inference, and Prediction" by Trevor Hastie, Robert Tibshirani and Jerome Friedman

Description Usage Format Source Examples

Human Tumour Microarray Data

data(nci)

The format is: num [1:6830, 1:64] 0.300 1.180 0.550 1.140 -0.265 ... - attr(*, "dimnames")=List of 2 ..$ : NULL ..$ : chr [1:64] "CNS" "CNS" "CNS" "RENAL" ...

Originally from http://genome-www.stanford.edu/nci60/. Currently via the book's website, https://web.stanford.edu/~hastie/ElemStatLearn/datasets/nci.data.csv.

1 2	str(nci) summary(nci)

 num [1:6830, 1:64] 0.3 1.18 0.55 1.14 -0.265 ...
 - attr(*, "dimnames")=List of 2
  ..$ : NULL
  ..$ : chr [1:64] "CNS" "CNS" "CNS" "RENAL" ...
      CNS               CNS                CNS               RENAL         
 Min.   :-5.5350   Min.   :-5.60504   Min.   :-3.04002   Min.   :-4.88000  
 1st Qu.:-0.3037   1st Qu.:-0.33004   1st Qu.:-0.28000   1st Qu.:-0.40998  
 Median : 0.0000   Median : 0.00000   Median : 0.00000   Median : 0.00000  
 Mean   : 0.0653   Mean   : 0.05076   Mean   : 0.07219   Mean   : 0.09383  
 3rd Qu.: 0.3350   3rd Qu.: 0.35994   3rd Qu.: 0.31000   3rd Qu.: 0.44501  
 Max.   : 6.1750   Max.   : 7.21996   Max.   : 6.37499   Max.   : 7.56500  
     BREAST             CNS                CNS               BREAST       
 Min.   :-4.6800   Min.   :-5.05000   Min.   :-4.28000   Min.   :-5.5200  
 1st Qu.:-0.4000   1st Qu.:-0.39000   1st Qu.:-0.40500   1st Qu.:-0.3750  
 Median : 0.0000   Median : 0.00000   Median : 0.00000   Median : 0.0000  
 Mean   : 0.1486   Mean   : 0.05198   Mean   : 0.04595   Mean   : 0.0349  
 3rd Qu.: 0.5150   3rd Qu.: 0.42501   3rd Qu.: 0.44500   3rd Qu.: 0.3850  
 Max.   : 7.4250   Max.   : 7.71500   Max.   : 8.66000   Max.   : 5.6500  
     NSCLC              NSCLC              RENAL              RENAL         
 Min.   :-4.24000   Min.   :-4.79500   Min.   :-3.70500   Min.   :-4.43500  
 1st Qu.:-0.31500   1st Qu.:-0.38000   1st Qu.:-0.34000   1st Qu.:-0.31000  
 Median : 0.00000   Median : 0.00000   Median : 0.00000   Median : 0.00000  
 Mean   : 0.03077   Mean   : 0.07197   Mean   : 0.08299   Mean   : 0.09751  
 3rd Qu.: 0.31000   3rd Qu.: 0.40375   3rd Qu.: 0.40000   3rd Qu.: 0.36000  
 Max.   : 5.14500   Max.   : 7.63501   Max.   : 7.26000   Max.   : 5.80000  
     RENAL              RENAL              RENAL              RENAL         
 Min.   :-4.40000   Min.   :-2.97500   Min.   :-4.75000   Min.   :-3.15000  
 1st Qu.:-0.27000   1st Qu.:-0.30000   1st Qu.:-0.31500   1st Qu.:-0.35000  
 Median : 0.00000   Median : 0.00000   Median : 0.00000   Median : 0.00000  
 Mean   : 0.04387   Mean   : 0.08031   Mean   : 0.08659   Mean   : 0.06823  
 3rd Qu.: 0.29875   3rd Qu.: 0.34999   3rd Qu.: 0.36002   3rd Qu.: 0.37000  
 Max.   : 4.62000   Max.   : 5.78000   Max.   : 5.75000   Max.   : 6.06000  
     RENAL              BREAST              NSCLC              RENAL         
 Min.   :-4.58000   Min.   :-5.380000   Min.   :-4.79249   Min.   :-4.59002  
 1st Qu.:-0.33499   1st Qu.:-0.430000   1st Qu.:-0.41000   1st Qu.:-0.44000  
 Median : 0.00000   Median : 0.000000   Median : 0.00000   Median : 0.00000  
 Mean   : 0.03692   Mean   : 0.005414   Mean   : 0.04411   Mean   :-0.01081  
 3rd Qu.: 0.36000   3rd Qu.: 0.415007   3rd Qu.: 0.41500   3rd Qu.: 0.41500  
 Max.   : 5.61500   Max.   : 5.880000   Max.   : 7.35500   Max.   : 8.00500  
    UNKNOWN            OVARIAN           MELANOMA           PROSTATE       
 Min.   :-3.71996   Min.   :-4.3400   Min.   :-4.43000   Min.   :-3.60501  
 1st Qu.:-0.33500   1st Qu.:-0.3800   1st Qu.:-0.29500   1st Qu.:-0.30498  
 Median : 0.00000   Median : 0.0000   Median : 0.00000   Median : 0.00000  
 Mean   : 0.02249   Mean   : 0.0212   Mean   : 0.02256   Mean   : 0.02859  
 3rd Qu.: 0.34000   3rd Qu.: 0.4100   3rd Qu.: 0.30000   3rd Qu.: 0.32000  
 Max.   : 5.32000   Max.   : 6.4500   Max.   : 6.83000   Max.   : 5.26000  
    OVARIAN            OVARIAN            OVARIAN           OVARIAN        
 Min.   :-5.34000   Min.   :-4.23000   Min.   :-4.0525   Min.   :-4.78000  
 1st Qu.:-0.33000   1st Qu.:-0.36000   1st Qu.:-0.2600   1st Qu.:-0.34000  
 Median : 0.00000   Median : 0.00000   Median : 0.0000   Median : 0.00000  
 Mean   : 0.05536   Mean   : 0.07602   Mean   : 0.0377   Mean   : 0.03054  
 3rd Qu.: 0.36000   3rd Qu.: 0.40500   3rd Qu.: 0.2700   3rd Qu.: 0.35000  
 Max.   : 7.91500   Max.   : 6.13999   Max.   : 7.1800   Max.   : 5.69000  
    OVARIAN            PROSTATE           NSCLC              NSCLC         
 Min.   :-3.39000   Min.   :-2.9700   Min.   :-3.85500   Min.   :-2.93001  
 1st Qu.:-0.31500   1st Qu.:-0.2800   1st Qu.:-0.30873   1st Qu.:-0.26000  
 Median : 0.00000   Median : 0.0000   Median : 0.00000   Median : 0.00000  
 Mean   : 0.05275   Mean   : 0.0295   Mean   : 0.06587   Mean   : 0.04534  
 3rd Qu.: 0.35502   3rd Qu.: 0.3000   3rd Qu.: 0.35500   3rd Qu.: 0.27000  
 Max.   : 4.79000   Max.   : 5.4800   Max.   : 5.82000   Max.   : 7.51000  
     NSCLC             LEUKEMIA          K562B-repro        K562A-repro      
 Min.   :-3.71000   Min.   :-4.309961   Min.   :-4.70000   Min.   :-4.96500  
 1st Qu.:-0.23500   1st Qu.:-0.380000   1st Qu.:-0.41500   1st Qu.:-0.43000  
 Median : 0.00000   Median : 0.000000   Median : 0.00000   Median : 0.00000  
 Mean   : 0.03568   Mean   : 0.008684   Mean   :-0.02501   Mean   :-0.06718  
 3rd Qu.: 0.22500   3rd Qu.: 0.395000   3rd Qu.: 0.38500   3rd Qu.: 0.37000  
 Max.   : 7.10500   Max.   : 5.440000   Max.   : 8.45000   Max.   : 8.17500  
    LEUKEMIA           LEUKEMIA           LEUKEMIA          LEUKEMIA      
 Min.   :-5.38498   Min.   :-4.78500   Min.   :-5.8600   Min.   :-6.1600  
 1st Qu.:-0.45998   1st Qu.:-0.49000   1st Qu.:-0.5650   1st Qu.:-0.4700  
 Median : 0.00000   Median : 0.00000   Median : 0.0000   Median : 0.0000  
 Mean   :-0.07325   Mean   :-0.05936   Mean   :-0.1421   Mean   :-0.1123  
 3rd Qu.: 0.39002   3rd Qu.: 0.42000   3rd Qu.: 0.4700   3rd Qu.: 0.4200  
 Max.   : 8.36002   Max.   : 6.20000   Max.   : 7.0500   Max.   : 7.6000  
    LEUKEMIA            COLON              COLON              COLON         
 Min.   :-5.68000   Min.   :-3.75004   Min.   :-5.22000   Min.   :-4.58000  
 1st Qu.:-0.44501   1st Qu.:-0.26504   1st Qu.:-0.40000   1st Qu.:-0.30002  
 Median : 0.00000   Median : 0.00000   Median : 0.00000   Median : 0.00000  
 Mean   :-0.07967   Mean   : 0.01684   Mean   :-0.02274   Mean   :-0.04529  
 3rd Qu.: 0.37000   3rd Qu.: 0.26996   3rd Qu.: 0.38000   3rd Qu.: 0.28688  
 Max.   : 7.15000   Max.   : 5.19996   Max.   : 5.11000   Max.   : 5.64000  
     COLON              COLON               COLON              COLON         
 Min.   :-4.55498   Min.   :-5.370000   Min.   :-5.21500   Min.   :-5.71500  
 1st Qu.:-0.36996   1st Qu.:-0.319980   1st Qu.:-0.40000   1st Qu.:-0.35002  
 Median : 0.00000   Median : 0.000000   Median : 0.00000   Median : 0.00000  
 Mean   : 0.01348   Mean   : 0.008972   Mean   : 0.00943   Mean   : 0.00535  
 3rd Qu.: 0.38002   3rd Qu.: 0.309998   3rd Qu.: 0.39499   3rd Qu.: 0.33998  
 Max.   : 6.64002   Max.   : 7.170000   Max.   : 8.04000   Max.   : 5.76998  
  MCF7A-repro           BREAST          MCF7D-repro           BREAST       
 Min.   :-5.27500   Min.   :-6.93998   Min.   :-4.12994   Min.   :-4.8400  
 1st Qu.:-0.43500   1st Qu.:-0.43002   1st Qu.:-0.35998   1st Qu.:-0.4200  
 Median : 0.00000   Median : 0.00000   Median : 0.00000   Median : 0.0000  
 Mean   :-0.07057   Mean   :-0.04521   Mean   :-0.01589   Mean   : 0.0141  
 3rd Qu.: 0.35000   3rd Qu.: 0.38998   3rd Qu.: 0.35002   3rd Qu.: 0.4200  
 Max.   : 5.88000   Max.   : 5.97998   Max.   : 6.09002   Max.   : 6.6100  
     NSCLC              NSCLC              NSCLC             MELANOMA       
 Min.   :-4.01998   Min.   :-5.12500   Min.   :-5.55000   Min.   :-5.89996  
 1st Qu.:-0.32498   1st Qu.:-0.33000   1st Qu.:-0.43000   1st Qu.:-0.41000  
 Median : 0.00000   Median : 0.00000   Median : 0.00000   Median : 0.00000  
 Mean   : 0.05025   Mean   :-0.03328   Mean   :-0.04387   Mean   : 0.01628  
 3rd Qu.: 0.37502   3rd Qu.: 0.31000   3rd Qu.: 0.39000   3rd Qu.: 0.42500  
 Max.   : 6.51002   Max.   : 6.65000   Max.   : 8.18000   Max.   : 6.15000  
     BREAST              BREAST            MELANOMA           MELANOMA      
 Min.   :-6.100020   Min.   :-6.12004   Min.   :-4.86500   Min.   :-5.1300  
 1st Qu.:-0.385000   1st Qu.:-0.38002   1st Qu.:-0.37000   1st Qu.:-0.3800  
 Median : 0.000000   Median : 0.00000   Median : 0.00000   Median : 0.0000  
 Mean   :-0.004496   Mean   :-0.01926   Mean   : 0.04063   Mean   : 0.0656  
 3rd Qu.: 0.364368   3rd Qu.: 0.38435   3rd Qu.: 0.37000   3rd Qu.: 0.4300  
 Max.   : 6.500000   Max.   : 5.99998   Max.   : 6.20000   Max.   : 5.6000  
    MELANOMA           MELANOMA           MELANOMA          MELANOMA       
 Min.   :-3.57002   Min.   :-3.40001   Min.   :-4.9600   Min.   :-4.42000  
 1st Qu.:-0.32000   1st Qu.:-0.33500   1st Qu.:-0.4100   1st Qu.:-0.33000  
 Median : 0.00000   Median : 0.00000   Median : 0.0000   Median : 0.00000  
 Mean   : 0.04068   Mean   : 0.07223   Mean   : 0.0217   Mean   : 0.03984  
 3rd Qu.: 0.32003   3rd Qu.: 0.38375   3rd Qu.: 0.4050   3rd Qu.: 0.36000  
 Max.   : 5.35999   Max.   : 5.49500   Max.   : 5.7900   Max.   : 6.22500

ElemStatLearn documentation built on Aug. 12, 2019, 9:04 a.m.

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ElemStatLearn
Data Sets, Functions and Examples from the Book: "The Elements of Statistical Learning, Data Mining, Inference, and Prediction" by Trevor Hastie, Robert Tibshirani and Jerome Friedman

nci: NCI microarray data (chap 14)
In ElemStatLearn: Data Sets, Functions and Examples from the Book: "The Elements of Statistical Learning, Data Mining, Inference, and Prediction" by Trevor Hastie, Robert Tibshirani and Jerome Friedman

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ElemStatLearn Data Sets, Functions and Examples from the Book: "The Elements of Statistical Learning, Data Mining, Inference, and Prediction" by Trevor Hastie, Robert Tibshirani and Jerome Friedman

nci: NCI microarray data (chap 14) In ElemStatLearn: Data Sets, Functions and Examples from the Book: "The Elements of Statistical Learning, Data Mining, Inference, and Prediction" by Trevor Hastie, Robert Tibshirani and Jerome Friedman

Description

Usage

Format

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Related to nci in ElemStatLearn...

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We want your feedback!

ElemStatLearn
Data Sets, Functions and Examples from the Book: "The Elements of Statistical Learning, Data Mining, Inference, and Prediction" by Trevor Hastie, Robert Tibshirani and Jerome Friedman

nci: NCI microarray data (chap 14)
In ElemStatLearn: Data Sets, Functions and Examples from the Book: "The Elements of Statistical Learning, Data Mining, Inference, and Prediction" by Trevor Hastie, Robert Tibshirani and Jerome Friedman