droso: An example dataset consisting of true and false donor splice...

In EncDNA: Encoding of Nucleotide Sequences into Numeric Feature Vectors

Description

The dataset contains 400 true donor sites, 400 false donor sites and 50 false sites as test set. Each sequence is of 40 nucleotides long. The conserved di-nucleotides GT are present at $21^st$ and $22^nd$ positions respectively.

Usage

data("droso")

Format

The dataset belongs to the class DNAStringSet.

Source

This is a sample dataset which was collected from the dataset originally developed by Reese et al. (1997). The dataset can also be accessed at http://www.fruitfly.org/sequence/drosophila-datasets.html.

References

Reese, M. G., Eeckman, F. H., Kulp, D. and Haussler, D. (1997). Improved splice site detection in Genie. Journal of Computational Biology, 4(3): 311-323.

Examples

data(droso)

EncDNA documentation built on May 28, 2019, 9 a.m.