GEOBreastCancer: Subset of GEO GSE10810 Breast Cancer Dataset

In EntropyExplorer: Tools for Exploring Differential Shannon Entropy, Differential Coefficient of Variation and Differential Expression

Description

This dataset consists of the first 10 rows of a case/control mRNA microarray dataset on human breast cancer. The intent is to provide a small dataset that helps a user quickly become familiar with the capabilities of EntropyExplorer, while at the same time using actual experimental data in a standard format. The dataset is divided into files "BreastCancer_case_10.txt" and "BreastCancer_control_10.txt" that contain 31 tumor and 27 control samples, respectively. Some of the samples are paired. The full dataset and its description are available from the Gene Expression Omnibus at http://www.ncbi.nlm.nih.gov/geo/ [1], accession number GSE10810 [2]. The data were obtained using the Affymetrix Human Genome U133 Plus 2.0 Array, and contain mRNA expression values for more than 18k probes.

Source

Gene Expression Omnibus

References

[1] Edgar R, Domrachev M, Lash AE. Gene Expression Omnibus: NCBI gene expression and hybridization array data repository Nucleic Acids Res. 2002 Jan 1;30(1):207-10

[2] Pedraza V, Gomez-Capilla JA, Escaramis G, Gomez C et al. Gene expression signatures in breast cancer distinguish phenotype characteristics, histologic subtypes, and tumor invasiveness. Cancer 2010 Jan 15;116(2):486-96.

EntropyExplorer documentation built on May 2, 2019, 6:08 a.m.