EpiContactTrace: Epidemiological Tool for Contact Tracing

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Routines for epidemiological contact tracing and visualisation of network of contacts.

Author
Maria Noremark [aut], Stefan Widgren [aut, cre]
Date of publication
2015-07-03 12:50:52
Maintainer
Stefan Widgren <stefan.widgren@gmail.com>
License
EUPL
Version
0.9.1
URLs

View on CRAN

Man pages

build_tree
Build a graph tree from the NetworkStructure
Contacts-class
Class '"Contacts"'
ContactTrace-class
Class '"ContactTrace"'
EpiContactTrace-package
Epidemiological tool for contact tracing.
InDegree-methods
'InDegree'
IngoingContactChain-methods
'IngoingContactChain'
NetworkStructure-methods
'NetworkStructure'
NetworkSummary-methods
'NetworkSummary'
OutDegree-methods
'OutDegree'
OutgoingContactChain-methods
'OutgoingContactChain'
plot-methods
plot,-method
position_tree
Position nodes in a tree
Report-methods
Generate a contact tracing 'Report'
ReportObject
Get current 'ContactTrace' object when generating a report
ShortestPaths-methods
'ShortestPaths'
show-methods
Show
Trace
Trace Contacts.
transfers
Movement Example Data

Files in this package

EpiContactTrace
EpiContactTrace/inst
EpiContactTrace/inst/Sweave
EpiContactTrace/inst/Sweave/speak-latex.rnw
EpiContactTrace/inst/Sweave/speak-html.rnw
EpiContactTrace/inst/CITATION
EpiContactTrace/inst/extdata
EpiContactTrace/inst/extdata/ns.rda
EpiContactTrace/tests
EpiContactTrace/tests/shortest-paths.R
EpiContactTrace/tests/contact-chain.R
EpiContactTrace/tests/arguments.R
EpiContactTrace/tests/network-summary.R
EpiContactTrace/tests/misc.R
EpiContactTrace/tests/degree.R
EpiContactTrace/tests/tree.R
EpiContactTrace/src
EpiContactTrace/src/trace.cpp
EpiContactTrace/NAMESPACE
EpiContactTrace/NEWS
EpiContactTrace/data
EpiContactTrace/data/transfers.rda
EpiContactTrace/R
EpiContactTrace/R/report.r
EpiContactTrace/R/EpiContactTrace-package.r
EpiContactTrace/R/ContactTrace.r
EpiContactTrace/R/plot.r
EpiContactTrace/R/ingoing-contact-chain.r
EpiContactTrace/R/network-structure.r
EpiContactTrace/R/network-summary.r
EpiContactTrace/R/tree.r
EpiContactTrace/R/out-degree.r
EpiContactTrace/R/Contacts.r
EpiContactTrace/R/in-degree.r
EpiContactTrace/R/trace.r
EpiContactTrace/R/outgoing-contact-chain.r
EpiContactTrace/R/shortest-paths.r
EpiContactTrace/R/show.r
EpiContactTrace/MD5
EpiContactTrace/DESCRIPTION
EpiContactTrace/man
EpiContactTrace/man/NetworkSummary-methods.Rd
EpiContactTrace/man/build_tree.Rd
EpiContactTrace/man/plot-methods.Rd
EpiContactTrace/man/InDegree-methods.Rd
EpiContactTrace/man/IngoingContactChain-methods.Rd
EpiContactTrace/man/Trace.Rd
EpiContactTrace/man/position_tree.Rd
EpiContactTrace/man/Contacts-class.Rd
EpiContactTrace/man/EpiContactTrace-package.Rd
EpiContactTrace/man/ContactTrace-class.Rd
EpiContactTrace/man/OutDegree-methods.Rd
EpiContactTrace/man/transfers.Rd
EpiContactTrace/man/ShortestPaths-methods.Rd
EpiContactTrace/man/NetworkStructure-methods.Rd
EpiContactTrace/man/ReportObject.Rd
EpiContactTrace/man/Report-methods.Rd
EpiContactTrace/man/OutgoingContactChain-methods.Rd
EpiContactTrace/man/show-methods.Rd