EstHer: Estimation of Heritability in High Dimensional Sparse Linear Mixed Models using Variable Selection
Version 1.0

Our method is a variable selection method to select active components in sparse linear mixed models in order to estimate the heritability. The selection allows us to reduce the size of the data sets which improves the accuracy of the estimations. Our package also provides a confidence interval for the estimated heritability.

AuthorAnna Bonnet and Celine Levy-Leduc
Date of publication2015-07-23 16:32:59
MaintainerAnna Bonnet <anna.bonnet@agroparistech.fr>
LicenseGPL-2
Version1.0
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("EstHer")

Getting started

Package overview

Popular man pages

bootstrap_corr: Computation of a confidence interval for the estimated...
EstHer-package: Estimation of Heritability in High Dimensional Sparse Linear...
prod_cpp: Additional function
Selvar: Estimation of heritability in high dimensional sparse linear...
W: Genetic matrix
X: Matrix of fixed effects
Y: Vector of observations
See all...

All man pages Function index File listing

Man pages

bootstrap_corr: Computation of a confidence interval for the estimated...
EstHer-package: Estimation of Heritability in High Dimensional Sparse Linear...
estim_herit: Estimation of heritability in linear mixed models.
prod_cpp: Additional function
Selvar: Estimation of heritability in high dimensional sparse linear...
W: Genetic matrix
X: Matrix of fixed effects
Y: Vector of observations

Functions

EstHer Man page
EstHer-package Man page
Selvar Man page Source code
W Man page
X Man page
Y Man page
bootstrap_corr Man page Source code
estim_herit Man page Source code
prod_cpp Man page Source code

Files

src
src/Makevars
src/prod_cpp.cpp
src/RcppExports.cpp
NAMESPACE
data
data/W.rda
data/X.rda
data/Y.rda
R
R/bootstrap_corr.R
R/Selvar.R
R/RcppExports.R
R/estim_herit.R
MD5
DESCRIPTION
man
man/W.Rd
man/prod_cpp.Rd
man/EstHer-package.Rd
man/Selvar.Rd
man/bootstrap_corr.Rd
man/estim_herit.Rd
man/X.Rd
man/Y.Rd
EstHer documentation built on May 19, 2017, 9:27 p.m.

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