ethseq.RM | R Documentation |
This function creates a GDS reference model that can be used to performe EthSEQ ancestry analysis
ethseq.RM(
vcf.fn,
annotations,
out.dir = "./",
model.name = "Reference.Model",
bed.fn = NA,
verbose = TRUE,
call.rate = 1,
cores = 1
)
vcf.fn |
vector of paths to genotype files in VCF format |
annotations |
data.frame with mapping of all samples names, ancestries and gender |
out.dir |
Path to output folder |
model.name |
Name of the output model |
bed.fn |
path to BED file with regions of interest |
verbose |
Print detailed information |
call.rate |
SNPs call rate cutoff for inclusion in the final reference model |
cores |
How many parallel cores to use in the reference model generation |
Logical value indicating the success of the analysis
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