data_LUSC_demo: LUSC Demo Data
In ExprNet: Characterizing Differential Expression of Selected Edges on a Network
data_LUSC_demo R Documentation
LUSC Demo Data
Description
An LUSC normalized gene expression matrix with selected genes.
Usage
data_LUSC_demo
Format
data_LUSC_demo
A data frame with 17 rows (genes) and 6 columns (the first column for vertex indices + 5 samples).
Details
The demo dataset gives the expression levels of genes which are involved in GO:0006306 (DNA methylation) and GO:0051781 (positive regulation of cell division) and have at least one neighbor on network_demo.
Each row corresponds to a gene. Each column corresponds to a sample. The first column are the numeric vertex indices.
The dataset is the extracted LUSC part of an aggregated dataset of LGG, GBM, LUSC and LUAD datasets on TCGA after quantile normalization.
LUSC and LUAD are two groups of lung tumors and are usually studied comparatively (as in this demo study).
Source
https://xenabrowser.net/datapages/?dataset=TCGA-LUSC.htseq_fpkm.tsv&host=https%3A%2F%2Fgdc.xenahubs.net&removeHub=https%3A%2F%2Fxena.treehouse.gi.ucsc.edu%3A443
ExprNet documentation built on Aug. 15, 2023, 9:08 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| data_LUSC_demo | R Documentation |
LUSC Demo Data
Description
An LUSC normalized gene expression matrix with selected genes.
Usage
data_LUSC_demo
Format
data_LUSC_demo
A data frame with 17 rows (genes) and 6 columns (the first column for vertex indices + 5 samples).
Details
The demo dataset gives the expression levels of genes which are involved in GO:0006306 (DNA methylation) and GO:0051781 (positive regulation of cell division) and have at least one neighbor on network_demo.
Each row corresponds to a gene. Each column corresponds to a sample. The first column are the numeric vertex indices.
The dataset is the extracted LUSC part of an aggregated dataset of LGG, GBM, LUSC and LUAD datasets on TCGA after quantile normalization.
LUSC and LUAD are two groups of lung tumors and are usually studied comparatively (as in this demo study).
Source
https://xenabrowser.net/datapages/?dataset=TCGA-LUSC.htseq_fpkm.tsv&host=https%3A%2F%2Fgdc.xenahubs.net&removeHub=https%3A%2F%2Fxena.treehouse.gi.ucsc.edu%3A443
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.