Factor Analysis for Multiple Testing (FAMT) : simultaneous tests under dependence in high-dimensional data

annotations | Gene annotations data frame |

as.FAMTdata | Create a 'FAMTdata' object from an expression, covariates and... |

covariates | Covariates data frame |

defacto | FAMT factors description |

emfa | Factor Analysis model adjustment with the EM algorithm |

expression | Gene expressions data frame |

FAMT-package | Factor Analysis for Multiple Testing (FAMT) : simultaneous... |

modelFAMT | The FAMT complete multiple testing procedure |

nbfactors | Estimation of the optimal number of factors of the FA model |

pi0FAMT | Estimation of the Proportion of True Null Hypotheses |

raw.pvalues | Calculation of classical multiple testing statistics and... |

residualsFAMT | Calculation of residual under null hypothesis |

summaryFAMT | Summary of a FAMTdata or a FAMTmodel |

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