Man pages for FAVA
Quantify Compositional Variability Across Relative Abundance Vectors
| bootstrap_fava | Statistically compare FAVA values between pairs of relative... |
| fava | Compute the Fst of a matrix of compositional vectors |
| fava_norm | Compute the normalized Fst of a matrix of compositional... |
| gini_simpson | Compute the Gini-Simpson index of a compositional vector |
| gini_simpson_mean | Compute the mean Gini-Simpson index of the rows in a matrix... |
| gini_simpson_pooled | Compute the pooled Gini-Simpson index of the rows in a matrix... |
| plot_relabund | Visualize a relative abundance matrix as a stacked bar plot. |
| relab_phyloseq | Generate a relative abundance matrix with sample metadata and... |
| time_weights | Compute a normalized weighting vector based on a vector of... |
| window_fava | Compute FAVA in sliding windows. |
| window_list | Generate sliding windows of specified length given the... |
| window_plot | Generate a plot of FAVA in sliding windows. |
| xue_microbiome_sample | Temporal microbiome composition data |
| xue_species_info | Table of species information |
| xue_species_similarity | Species similarity matrix for the species included in... |
| xue_species_tree | Phylogenetic tree for the species included in... |
