xue_species_similarity: Species similarity matrix for the species included in...
In FAVA: Quantify Compositional Variability Across Relative Abundance Vectors
xue_species_similarity R Documentation
Species similarity matrix for the species included in xue_microbiome_sample
Description
A similarity matrix, with entry (i,j) corresponding to the pairwise similarity
between species i and species j. This similarity matrix was derived from a
phylogenetic distance matrix, inferred from the tree xue_species_tree,
using the expression s(i,j) = exp(-d(i,j)), where d(i,j) is the phylogenetic
distance between species i and j.
Usage
xue_species_similarity
Format
xue_species_similarity
A data frame with 524 rows and 524 columns, each corresponding to one species.
FAVA documentation built on April 4, 2025, 4:47 a.m.
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| xue_species_similarity | R Documentation |
Species similarity matrix for the species included in xue_microbiome_sample
Description
A similarity matrix, with entry (i,j) corresponding to the pairwise similarity between species i and species j. This similarity matrix was derived from a phylogenetic distance matrix, inferred from the tree xue_species_tree, using the expression s(i,j) = exp(-d(i,j)), where d(i,j) is the phylogenetic distance between species i and j.
Usage
xue_species_similarity
Format
xue_species_similarity
A data frame with 524 rows and 524 columns, each corresponding to one species.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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