rejection.path | R Documentation |
FDX
objects)Displays the number of rejections of the raw p-values in a FDX
object in dependence of the exceedance probability zeta
.
rejection.path( x, xlim = NULL, ylim = NULL, main = NULL, xlab = expression(zeta), ylab = "Number of Rejections", verticals = FALSE, pch = 19, ref.show = FALSE, ref.col = "gray", ref.lty = 2, ref.lwd = 2, ... )
x |
an object of class " |
xlim |
the x limits of the plot. If |
ylim |
the y limits of the plot. If |
main |
main title. If |
xlab, ylab |
labels for x and y axis. |
verticals |
logical; if |
pch |
jump point character. |
ref.show |
logical; if |
ref.col |
color of the reference line. |
ref.lty, ref.lwd |
line type and thickness for the reference line. |
... |
further arguments to |
Invisibly returns a stepfun
object that computes the number of
rejectionsin dependence on the exceedance probability zeta
.
X1 <- c(4, 2, 2, 14, 6, 9, 4, 0, 1) X2 <- c(0, 0, 1, 3, 2, 1, 2, 2, 2) N1 <- rep(148, 9) N2 <- rep(132, 9) Y1 <- N1 - X1 Y2 <- N2 - X2 df <- data.frame(X1, Y1, X2, Y2) df # Construction of the p-values and their supports (fisher.pvalues.support # is from 'DiscreteFDR' package!) df.formatted <- fisher.pvalues.support(counts = df, input = "noassoc") raw.pvalues <- df.formatted$raw pCDFlist <- df.formatted$support DLR <- DLR(raw.pvalues, pCDFlist) NDLR <- NDLR(raw.pvalues, pCDFlist) rejection.path(DLR, xlim = c(0, 1), ref.show = TRUE, ref.col = "green", ref.lty = 4) rejection.path(NDLR, col = "red", add = TRUE)
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