FILEST-package: Fine-Level Structure Simulator

In FILEST: Fine-Level Structure Simulator

Description

A population genetic simulator, which is able to generate synthetic datasets for single-nucleotide polymorphisms (SNP) for multiple populations. The genetic distances among populations can be set according to the Fixation Index (Fst). This tool is able to simulate outlying individuals and missing SNPs can be specified. For Genome-wide association study (GWAS), disease status can be set in desired level according risk ratio.

Details

The R package FILEST requires KRIS and rARPACK.

Here is the list of functions in the R package FILEST:

• cbind_bigmatrix

• create.template.setting

• demo.filest

• filest

• rbind_bigmatrix

Author(s)

Maintainer: Kridsadakorn Chaichoompu [e-mail]

Authors:

• Kristel Van Steen

• Fentaw Abegaz

See Also

Useful links:

• https://gitlab.com/kris.ccp/filest

• Report bugs at https://gitlab.com/kris.ccp/filest/-/issues

FILEST documentation built on Jan. 25, 2021, 5:05 p.m.