FLLat: Fused Lasso Latent Feature Model
Version 1.2

Fits the Fused Lasso Latent Feature model, which is used for modeling multi-sample aCGH data to identify regions of copy number variation (CNV). Produces a set of features that describe the patterns of CNV and a set of weights that describe the composition of each sample. Also provides functions for choosing the optimal tuning parameters and the appropriate number of features, and for estimating the false discovery rate.

AuthorGen Nowak [aut, cre], Trevor Hastie [aut], Jonathan R. Pollack [aut], Robert Tibshirani [aut], Nicholas Johnson [aut]
Date of publication2015-09-16 12:47:04
MaintainerGen Nowak <gen.nowak@gmail.com>
LicenseGPL (>= 2)
Version1.2
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("FLLat")

Popular man pages

FLLat: Fused Lasso Latent Feature Model
FLLat.BIC: Optimal Tuning Parameters for the Fused Lasso Latent Feature...
FLLat.FDR: False Discovery Rate for the Fused Lasso Latent Feature Model
FLLat.PVE: Choosing the Number of Features for the Fused Lasso Latent...
plot.FLLat: Plots Results from the Fused Lasso Latent Feature Model
predict.FLLat: Predicted Values and Weights based on the Fused Lasso Latent...
simaCGH: Simulated aCGH Data
See all...

All man pages Function index File listing

Man pages

FLLat: Fused Lasso Latent Feature Model
FLLat.BIC: Optimal Tuning Parameters for the Fused Lasso Latent Feature...
FLLat.FDR: False Discovery Rate for the Fused Lasso Latent Feature Model
FLLat.PVE: Choosing the Number of Features for the Fused Lasso Latent...
plot.FLLat: Plots Results from the Fused Lasso Latent Feature Model
predict.FLLat: Predicted Values and Weights based on the Fused Lasso Latent...
simaCGH: Simulated aCGH Data

Functions

Files

inst
inst/doc
inst/doc/FLLat_tutorial.rnw
inst/doc/FLLat_tutorial.R
inst/doc/FLLat_tutorial.pdf
src
src/L2L1VitExact.c
src/Lat_L2.cpp
src/gen_lat_func.h
src/gen_lat_func.cpp
src/FL.h
NAMESPACE
NEWS
data
data/simaCGH.RData
R
R/plot.PVE.R
R/FLLat.BIC.R
R/plot.FDR.R
R/FLLat.PVE.R
R/Max.Lam0.R
R/predict.FLLat.R
R/FLLat.FDR.R
R/CheckPars.R
R/FLLat.R
R/plot.FLLat.R
vignettes
vignettes/FLLat_tutorial.rnw
MD5
build
build/vignette.rds
DESCRIPTION
man
man/plot.FLLat.Rd
man/FLLat.FDR.Rd
man/FLLat.PVE.Rd
man/simaCGH.Rd
man/FLLat.Rd
man/FLLat.BIC.Rd
man/predict.FLLat.Rd
FLLat documentation built on May 19, 2017, 11:33 p.m.

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