read.sanger | R Documentation |
This function parses a FSA/AB1 file using read.fsa
, with few adjustments for Sanger sequencing experiments.
read.sanger(file, channelOrder = NULL, guess.threshold = 0.3, processed = NA,
lowess = FALSE, ...)
file |
Single character value, the name and path of the file to parse. |
channelOrder |
Character vector, providing 'A', 'C', 'G' and 'T' in the order of the used channels. If |
guess.threshold |
Single numeric value, setting the tolerance to use for channel guessing validation. Lower values mean higher chances to get an error for channel guessing failure. |
processed |
To be passed to |
lowess |
To be passed to |
... |
To be passed to |
A S3 object of class fsa
Sylvain Mareschal
read.fsa
, read.abif
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