hvtn505tier1: HVTN 505 Immune Correlates Tier 1 Dataset
In FSDAM: Forward Stepwise Deep Autoencoder-Based Monotone NLDR
Description
Usage
Format
References
Description
Contains eight immune response variables from the vaccine arm of the HVTN 505 trial.
Usage
1
data("hvtn505tier1")
Format
A data frame with 150 observations on the following 9 variables.
ptida character vector
CD8_ANYVRCENV_PolyfunctionalityScore_scorea numeric vector
IgGw28_env_mdwa numeric vector
IgGw28_V1V2_mdwa numeric vector
IgGw28_gp41_mdwa numeric vector
ADCP1a numeric vector
R2aConSgp140CFIa numeric vector
IgAw28_env_mdwa numeric vector
IgG3w28_env_mdwa numeric vector
References
Fong, Y, Xu, J. Multi-Stage Simultaneous Deep Autoencoder-based Monotone (MSS-DAM) Nonlinear Dimensionality Reduction Methods, Journal of Computational and Graphical Statistics, in press.
Janes, H.E., Cohen, K.W., Frahm, N., De Rosa, S.C., Sanchez, B., Hural, J. et al (2017), Higher T-cell responses induced by DNA/rAd5 HIV-1 preventive vaccine are associated with lower HIV-1 infection risk in an efficacy trial, The Journal of infectious diseases, 215, 1376-1385.
Fong, Y., Shen, X., Ashley, V.C., Deal, A., Seaton, K.E., Yu, C. et al (2018), Vaccine-induced antibody responses modify the association between T-cell immune responses and HIV-1 infection risk in HVTN 505, The Journal of Infectious Diseases, 217, 1280–1288.
Neidich, S.D., Fong, Y., Shen, X., Ashley, V.C., Deal, A., Seaton, K.E. et al (2019), Antibody Fc-effector Functions and IgG3 Associates with Decreased HIV-1 Acquisition Risk, The Journal of Infectious Diseases, 129, 4838-4849.
FSDAM documentation built on Nov. 20, 2020, 5:10 p.m.
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Description Usage Format References
Description
Contains eight immune response variables from the vaccine arm of the HVTN 505 trial.
Usage
1 | data("hvtn505tier1")
|
Format
A data frame with 150 observations on the following 9 variables.
ptida character vector
CD8_ANYVRCENV_PolyfunctionalityScore_scorea numeric vector
IgGw28_env_mdwa numeric vector
IgGw28_V1V2_mdwa numeric vector
IgGw28_gp41_mdwa numeric vector
ADCP1a numeric vector
R2aConSgp140CFIa numeric vector
IgAw28_env_mdwa numeric vector
IgG3w28_env_mdwa numeric vector
References
Fong, Y, Xu, J. Multi-Stage Simultaneous Deep Autoencoder-based Monotone (MSS-DAM) Nonlinear Dimensionality Reduction Methods, Journal of Computational and Graphical Statistics, in press.
Janes, H.E., Cohen, K.W., Frahm, N., De Rosa, S.C., Sanchez, B., Hural, J. et al (2017), Higher T-cell responses induced by DNA/rAd5 HIV-1 preventive vaccine are associated with lower HIV-1 infection risk in an efficacy trial, The Journal of infectious diseases, 215, 1376-1385.
Fong, Y., Shen, X., Ashley, V.C., Deal, A., Seaton, K.E., Yu, C. et al (2018), Vaccine-induced antibody responses modify the association between T-cell immune responses and HIV-1 infection risk in HVTN 505, The Journal of Infectious Diseases, 217, 1280–1288.
Neidich, S.D., Fong, Y., Shen, X., Ashley, V.C., Deal, A., Seaton, K.E. et al (2019), Antibody Fc-effector Functions and IgG3 Associates with Decreased HIV-1 Acquisition Risk, The Journal of Infectious Diseases, 129, 4838-4849.
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